CX289006

Overview
NameCX289006
Unique NameCX289006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.466e-27
Identity = 74/224 (33.04%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   10 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE-ITESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEV-----------DPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKI-SHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            LA+K N+IL +HI+   P +K++I   +     +   YGE I    A +  LLL+IL+++S  + + ++G NEE+  +E +GGARI YIF   F  +               +P   L+D  ++ A++N+    S +F+P   F+ LIR+Q+ R+ +P +Q +  I DELI+I +     + L RFP+L++R+ EV  N LR+ ++     I  +++ EM +IN
Sbjct:  431 LAQKCNKILTKHIRDTFPSVKNQIRQLIKKYESDLEKYGEPIPLRSAEKSRLLLDILNEFSRKYRADLDGTNEELILNEFNGGARIRYIFSKAFQSTTAAAATTSTDNSGGGEPFGWLSDQQLKIALRNS---GSTMFIPQKIFDSLIRKQLERVREPLIQTSEIILDELIRILTQADYSHVLSRFPILKERIVEVSNNALRKLVKECNQSISQMVDAEMSFIN 651          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN1_CAEEL (Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.308e-25
Identity = 65/213 (30.52%), Postives = 120/213 (56.34%), Query Frame = 1
Query:   10 LAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGA-LLLNILSKYSEAFSSMVEGKNEEM-STSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            L   LNQ L  HI+  LP L+  +   + ++ K+ A Y     +  G+    LL ++++++      +EG + ++ ST+ELSGGARI+ +F   F   + +++  E     +I+ AI+N  G +  LF PD+ FE + ++QI RL +PSL+C   + +EL  +   C  + + R+P LR  ++ ++ + +RE  + ++  IG I++ E+ Y+N
Sbjct:  279 LQHTLNQQLTNHIRDTLPTLRDSLQKKMFAMEKDVAEYKNYQPNDPGRKTKALLQMVTQFNADIERSIEGSSAKLVSTNELSGGARINRLFHERFPFEIVKMEIDEKEMRKEIQYAIRNIHGIRVGLFTPDMAFEAIAKKQITRLKEPSLKCVDLVVNELANVIRQC-ADTMARYPRLRDELERIVVSHMREREQIAKQQIGLIVDYELAYMN 490          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN3_HUMAN (Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4)

HSP 1 Score: 115.161 bits (287), Expect = 3.015e-25
Identity = 65/214 (30.37%), Postives = 115/214 (53.74%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LP  ++++   L+S+  E  +Y     E    +   LL ++ +++  F   +EG  +++ T ELSGGA+I+ IF   F   + +++  E     +I  AI+N  G ++ LF PD+ FE ++++QI +L  PSL+    +  ELI     C   +L  FP L +  + ++ N +RE    ++  +  +I++++ YIN
Sbjct:  275 PHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAYKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSVDLVIQELINTVKKC-TKKLANFPRLCEETERIVANHIREREGKTKDQVLLLIDIQVSYIN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 64/214 (29.91%), Postives = 114/214 (53.27%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LP  ++++   L+S+  E  ++     E    +   LL ++ +++  F   +EG  +++ T ELSGGA+I+ IF   F   + +++  E     +I  AI+N  G ++ LF PD+ FE ++++QI +L  PSL+    +  ELI     C    L  FP L +  + ++ N +RE    ++  +  +I++++ YIN
Sbjct:  275 PHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSVDLVMQELINTVKKC-TKRLANFPRLCEETERIVANHIREREGKTKDQVLLLIDIQVSYIN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN3_MOUSE (Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 64/214 (29.91%), Postives = 114/214 (53.27%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT-ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L K LNQ L  HI+  LP  ++++   L+S+  E  ++     E    +   LL ++ +++  F   +EG  +++ T ELSGGA+I+ IF   F   + +++  E     +I  AI+N  G ++ LF PD+ FE ++++QI +L  PSL+    +  ELI     C    L  FP L +  + ++ N +RE    ++  +  +I++++ YIN
Sbjct:  275 PHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERFPFEIVKMEFNEKELRREISYAIKNIHGIRTGLFTPDMAFEAIVKKQIVKLKGPSLKSVDLVMQELINTVKKC-TKRLANFPRLCEETERIVANHIREREGKTKDQVLLLIDIQVSYIN 487          
BLAST of CX289006 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21
Identity = 62/215 (28.84%), Postives = 111/215 (51.63%), Query Frame = 1
Query:    4 PQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAG-QGALLLNILSKYSEAFSSMVEGKNEEM-STSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELIKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEMEMDYIN 642
            P L + LNQ L  HI+  LPGL+ ++   ++++ KE   +       A  +   +L ++ +    F   +EG    + +T+ELSGGA+I+ IF       + ++   E     +I  AI+N  G +  LF PD+ FE +++RQIA L +P ++C   +  EL  +   C   ++ R+P LR+  + +I   +R+     +  I  +I+ E+ Y+N
Sbjct:  270 PYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLTLEKEVEEFKHFQPGDASIKTKAMLQMIQQLQSDFERTIEGSGSALVNTNELSGGAKINRIFHERLRFEIVKMACDEKELRREISFAIRNIHGIRVGLFTPDMAFEAIVKRQIALLKEPVIKCVDLVVQELSVVVRMCTA-KMSRYPRLREETERIITTHVRQREHSCKEQILLLIDFELAYMN 483          
The following BLAST results are available for this feature:
BLAST of CX289006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DYNB_DICDI2.466e-2733.04Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]
DYN1_CAEEL2.308e-2530.52Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV... [more]
DYN3_HUMAN3.015e-2530.37Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4[more]
DYN3_RAT1.146e-2429.91Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2[more]
DYN3_MOUSE1.146e-2429.91Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1[more]
DYN_DROME1.186e-2128.84Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC02007H10SK IF1 Citrus clementina cDNA clone C02007H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289006 ID=CX289006; Name=CX289006; organism=Citrus clementina; type=EST; length=643bp
GTTCCTCAGTTGGCAAAGAAGTTGAACCAGATTCTTGTACAACATATCAA
GGCTATACTTCCTGGGTTGAAGTCACGCATTAGCTCTGCATTAGTTTCTG
TTGCAAAGGAGCATGCAAGCTACGGGGAAATCACAGAATCAAAGGCTGGT
CAGGGAGCTCTACTCCTGAATATTCTTTCTAAATACTCCGAAGCATTTTC
TTCAATGGTGGAGGGAAAGAATGAAGAAATGTCAACATCTGAGCTTTCTG
GCGGGGCACGAATTCACTATATTTTTCAGTCAATCTTTGTGAAGAGCTTA
GAGGAGGTTGATCCCTGTGAGGACTTGACTGACGATGACATTCGAACTGC
TATTCAGAATGCAACTGGTCCCAAATCTGCACTATTTGTACCAGACGTGC
CGTTCGAAGTTCTTATTCGAAGGCAAATTGCTCGCTTGTTGGATCCTAGT
CTTCAGTGTGCGAGGTTCATATATGATGAGTTAATAAAGATTAGCCATCA
CTGTCTTGTGAATGAACTGCAGCGCTTTCCTGTTCTTAGAAAGCGTATGG
ATGAGGTCATCGGGAACTTTCTGCGAGAAGGCCTTGAGCCCTCCGAGACA
ATGATTGGACATATCATTGAAATGGAGATGGACTATATAAACA
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