CX289018

Overview
NameCX289018
Unique NameCX289018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15266 contig Ccv1_Contig15266:600..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289018 vs. ExPASy Swiss-Prot
Match: TCMO_PETCR (Trans-cinnamate 4-monooxygenase OS=Petroselinum crispum GN=CYP73A10 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.461e-46
Identity = 90/125 (72.00%), Postives = 93/125 (74.40%), Query Frame = 3
Query:    3 LHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRS 377
            LHDAKL GYD+PAESKILVNAWWLANNPA W K             SKVEANGNDF+Y+PFGVGRRSCP              RLVQNFELLPPPGQSKIDTAEKGGQFSL ILKHSTIV KPRS
Sbjct:  381 LHDAKLAGYDIPAESKILVNAWWLANNPAHWNKPDEFRPERFLEEESKVEANGNDFKYIPFGVGRRSCPGIILALPILGIVIGRLVQNFELLPPPGQSKIDTAEKGGQFSLQILKHSTIVCKPRS 505          
BLAST of CX289018 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.493e-46
Identity = 90/126 (71.43%), Postives = 93/126 (73.81%), Query Frame = 3
Query:    3 LHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRSF 380
            LHD KL G+D+PAESKILVNAWWL NNPA WKK             S VEANGNDFRYLPFGVGRRSCP              RLVQN ELLPPPGQSKIDT+EKGGQFSLHILKHSTIVAKPRSF
Sbjct:  381 LHDPKLNGFDIPAESKILVNAWWLPNNPAHWKKPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNVELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPRSF 506          
BLAST of CX289018 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.786e-44
Identity = 85/125 (68.00%), Postives = 91/125 (72.80%), Query Frame = 3
Query:    3 LHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRS 377
            LHDAKL GYD+PAESKILVNAWWLANNP  WKK             S VEANGNDFRY+PFGVGRRSCP              R+VQNFELLPPPGQSK+DT+EKGGQFSLHIL HS IV KPR+
Sbjct:  380 LHDAKLAGYDIPAESKILVNAWWLANNPNSWKKPEEFRPERFFEEESHVEANGNDFRYVPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKVDTSEKGGQFSLHILNHSIIVMKPRN 504          
BLAST of CX289018 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.865e-44
Identity = 86/125 (68.80%), Postives = 91/125 (72.80%), Query Frame = 3
Query:    3 LHDAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRS 377
            L+DAKL GYD+PAESKILVNAWWLANNPA WK              S VEANGNDFRY+PFGVGRRSCP              R+VQNFELLPPPGQSKIDT+EKGGQFSL IL HSTIV KPRS
Sbjct:  380 LNDAKLAGYDIPAESKILVNAWWLANNPAHWKDPQVFRPERFLEEESGVEANGNDFRYIPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKIDTSEKGGQFSLFILNHSTIVLKPRS 504          
BLAST of CX289018 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.355e-12
Identity = 39/107 (36.45%), Postives = 50/107 (46.73%), Query Frame = 3
Query:    9 DAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPG--QSKIDTAEKGG 323
            D K+GGYD+P  S + VN W +A +PA WK                V+  G+DFR LPFG GRR CP               L+ +F   PP G    +ID +E  G
Sbjct:  375 DVKIGGYDIPKGSNVHVNVWAVARDPAVWKN--PFEFRPERFLEEDVDMKGHDFRLLPFGAGRRVCPGAQLGINLVTSMMSHLLHHFVWTPPQGTKPEEIDMSENPG 479          
BLAST of CX289018 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.441e-11
Identity = 38/107 (35.51%), Postives = 49/107 (45.79%), Query Frame = 3
Query:    9 DAKLGGYDVPAESKILVNAWWLANNPAQWKKXXXXXXXXXXXXXSKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQ--SKIDTAEKGG 323
            + K+GGYD+P  S + VN W +A +PA WK                V+  G+DFR LPFG GRR CP               L+ +F   PP G    +ID  E  G
Sbjct:  376 NVKVGGYDIPKGSNVHVNVWAVARDPAVWK--DPLEFRPERFLEEDVDMKGHDFRLLPFGSGRRVCPGAQLGINLAASMLGHLLHHFCWTPPEGMKPEEIDMGENPG 480          
The following BLAST results are available for this feature:
BLAST of CX289018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TCMO_PETCR1.461e-4672.00Trans-cinnamate 4-monooxygenase OS=Petroselinum cr... [more]
TCMO_MEDSA2.493e-4671.43Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
TCMO_ARATH1.786e-4468.00Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
TCMO_RUTGR8.865e-4468.80Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]
C98A3_ARATH2.355e-1236.45Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C98A2_SOYBN4.441e-1135.51Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02008B05SK IF1 Citrus clementina cDNA clone C02008B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289018 ID=CX289018; Name=CX289018; organism=Citrus clementina; type=EST; length=381bp
ACCTTCACGACGCCAAGCTTGGAGGCTACGACGTCCCTGCTGAGAGCAAA
ATCCTAGTGAACGCGTGGTGGCTCGCCAACAATCCCGCCCAATGGAAGAA
ACCTGAAGAATTCAGGCCTGAGAGGTTTTTGGAGGAGGAGTCCAAGGTTG
AGGCTAATGGAAATGACTTCCGTTACCTTCCTTTCGGTGTTGGGAGAAGA
AGCTGCCCTGGAATTATCCTTGCTTTGCCAATTCTTGGTATCACTATTGG
GCGTTTGGTACAGAACTTTGAGCTCTTGCCTCCTCCAGGTCAATCTAAGA
TTGACACTGCAGAGAAAGGTGGGCAGTTCAGTTTGCACATTTTGAAGCAC
TCGACCATTGTTGCCAAGCCTAGATCATTCT
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