CX289026

Overview
NameCX289026
Unique NameCX289026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length356
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10270 contig Ccv1_Contig10270:32..387. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.857e-36
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+L
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.857e-36
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+L
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.857e-36
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+L
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.857e-36
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+L
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRIL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.157e-35
Identity = 70/102 (68.63%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+L
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRIL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.973e-35
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+L
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRIL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.366e-35
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+L
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRIL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 139.043 bits (349), Expect = 7.018e-33
Identity = 64/102 (62.75%), Postives = 85/102 (83.33%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTREARLP++++W+RR+RVL
Sbjct:    1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVL 102          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_MAIZE (60S ribosomal protein L19 (Fragment) OS=Zea mays GN=RPL19 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.567e-24
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1
Query:   58 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARR 243
            LKLQKRL+AS LKCG+GKVWLDPNEV+EISMANSRQNIRKLVKDGFII+KP KIHSRSR ++
Sbjct:    1 LKLQKRLAASYLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSRCKK 62          
BLAST of CX289026 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.263e-23
Identity = 49/102 (48.04%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   49 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 354
            M +LK+Q+R++A +LKCG  +VW+DP +V+E++ A +R++IR+L+K+G I +KP +  SR RAR   E K+KGRH G G RKG + AR+  K LW++ +R L
Sbjct:    1 MNTLKMQRRIAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRAL 102          
The following BLAST results are available for this feature:
BLAST of CX289026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL19_MOUSE8.857e-3667.6560S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA8.857e-3667.6560S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN8.857e-3667.6560S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN8.857e-3667.6560S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL19_XENLA1.157e-3568.6360S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_DANRE1.973e-3567.6560S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_ICTPU3.366e-3567.6560S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_YEAST7.018e-3362.7560S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_MAIZE1.567e-2485.4860S ribosomal protein L19 (Fragment) OS=Zea mays G... [more]
RL19_PYRHO2.263e-2348.0450S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionC02008C01SK IF1 Citrus clementina cDNA clone C02008C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289026 ID=CX289026; Name=CX289026; organism=Citrus clementina; type=EST; length=356bp
GTTGGCCACTGATCGCGAGAGACAGAGGGGGAGAGAAGAGAAGGGAAAAT
GGTGTCGTTGAAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCG
GACGTGGCAAGGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATG
GCCAACTCCAGGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCAT
CAGGAAGCCAACAAAGATCCACTCCCGTTCTCGCGCTCGCAGAATGAAGG
AAGCCAAGAGGAAGGGCCGTCACTCTGGATATGGTAAGAGAAAGGGTACT
AGGGAGGCGAGGCTTCCCACCAAAATCCTCTGGATGAGAAGGATGCGTGT
GCTCAG
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