CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG2_MACMU (ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.955e-24
Identity = 54/128 (42.19%), Postives = 86/128 (67.19%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAA 388
            TMT  +K ER    I+E+GL    ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++      RTII SIHQP   +F+LF +L LL+SG+ ++ GPA  A
Sbjct:  151 TMTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-----GRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEA 273          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG2_HUMAN (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 9.955e-24
Identity = 54/128 (42.19%), Postives = 86/128 (67.19%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAA 388
            TMT  +K ER    I+E+GL    ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++      RTII SIHQP   +F+LF +L LL+SG+ ++ GPA  A
Sbjct:  151 TMTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-----GRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEA 273          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG2_RAT (ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.698e-23
Identity = 53/126 (42.06%), Postives = 85/126 (67.46%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +K ER    IKE+GL    ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++      RTII SIHQP   +F+LF +L LL+SG+ ++ GPA  A E+
Sbjct:  155 EKNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-----GRTIIFSIHQPRYSIFKLFDSLTLLASGKLMFHGPAQKALEY 275          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.698e-23
Identity = 53/130 (40.77%), Postives = 84/130 (64.62%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +T+ +K E+ EM + ++GL    N+ IGG   +G+SGG+++RVSI  EML  P LL LDEPTSGLDS  +  +++ +  L +     G RT++T+IHQPSS ++++F  + +LS G  +Y G +    E+
Sbjct:  188 LTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLAR-----GGRTVVTTIHQPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEY 312          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.218e-23
Identity = 55/131 (41.98%), Postives = 84/131 (64.12%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            T+T+ +K++RA   I+E+GL+   +T IGG   +G+SGG+++RV I  E++T P LL LDEPTS LDS  +  ++  +  + +       +TI+T+IHQPSS +F  F  L +LS G  +YFG AS A  +
Sbjct:  256 TLTEQEKEQRAASVIQELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAK-----AGKTIVTTIHQPSSRLFHRFDKLVVLSRGSLLYFGKASEAMSY 381          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB26G_ARATH (ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.783e-23
Identity = 59/142 (41.55%), Postives = 86/142 (60.56%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMN--------TRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAAS---YYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +M+K QK  + EM IKE+GL+  +         TR+GG   KG+SGG+++R SI  E+L  P LL LDEPTSGLDS ++    +++  +AK          RT+IT+IHQPSS +F +F  L L+S G   ++G A  + E+
Sbjct:  194 SMSKEQKYAKIEMIIKELGLERFIEKHNERCRRTRVGGGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAK--------AGRTVITTIHQPSSRMFHMFDKLLLISEGHPAFYGKARESMEY 327          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB25G_ARATH (ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            ++T+  K   AE  I E+GL    NT +G    +G+SGG+++RVSI  E+L  P LL LDEPTSGLD+ A+  ++  +A L    HG G +T++TSIHQPSS VFQ+F  + LLS G+ ++ G
Sbjct:  172 SLTRDVKLRAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGL---AHGKG-KTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVG 290          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG8_MOUSE (ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.438e-22
Identity = 50/125 (40.00%), Postives = 85/125 (68.00%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPA 379
            T ++ Q+ +R E  I E+ L+   NTR+G    +G+SGG++RRVSI +++L  P +L LDEPTSGLDS  ++ +++ +++L +     G+R ++ S+HQP S++F+LF  + L++SG  +Y G A
Sbjct:  179 TFSQAQRDKRVEDVIAELRLRQCANTRVGNTYVRGVSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVTTLSRLAK-----GNRLVLISLHQPRSDIFRLFDLVLLMTSGTPIYLGAA 298          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: YO075_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YOL075C OS=Saccharomyces cerevisiae GN=YOL075C/YOL074C PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.452e-22
Identity = 51/115 (44.35%), Postives = 76/115 (66.09%), Query Frame = 2
Query:   23 KKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVY 367
            KK   E  I+E+GL+D  +T +G    +GLSGG+KRR+SI  +M++ P ++FLDEPT+GLD+ +++ V+  + KL + D     RT I SIHQP S++  L   +C+LS G  VY
Sbjct:  157 KKLMVEQLIEELGLKDCADTLVGDNSHRGLSGGEKRRLSIGTQMISNPSIMFLDEPTTGLDAYSAFLVIKTLKKLAKED----GRTFIMSIHQPRSDILFLLDQVCILSKGNVVY 267          

HSP 2 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 54/123 (43.90%), Postives = 82/123 (66.67%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFG 373
            +T+ ++ ER +  I+ +GL+   N  IG    KG+SGG+KRRV++ +++L  P +L LDEPTSGLDS  S  ++  + KL  R+ G   +TII +IHQP SE+F+ F N+ LL+ SG+T + G
Sbjct:  805 LTEAERMERTDNLIRSLGLKHCENNIIGNEFVKGISGGEKRRVTMGVQLLNDPPILLLDEPTSGLDSFTSATILEILEKL-CREQG---KTIIITIHQPRSELFKRFGNVLLLAKSGRTAFNG 923          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG8_HUMAN (ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.452e-22
Identity = 50/125 (40.00%), Postives = 84/125 (67.20%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPA 379
            T ++ Q+ +R E  I E+ L+   +TR+G    +GLSGG++RRVSI +++L  P +L LDEPTSGLDS  ++ ++  +++L +     G+R ++ S+HQP S++F+LF  + L++SG  +Y G A
Sbjct:  178 TFSQAQRDKRVEDVIAELRLRQCADTRVGNMYVRGLSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRLAK-----GNRLVLISLHQPRSDIFRLFDLVLLMTSGTPIYLGAA 297          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ABCG2_MACMU9.955e-2442.19ATP-binding cassette sub-family G member 2 OS=Maca... [more]
ABCG2_HUMAN9.955e-2442.19ATP-binding cassette sub-family G member 2 OS=Homo... [more]
ABCG2_RAT1.698e-2342.06ATP-binding cassette sub-family G member 2 OS=Ratt... [more]
AB21G_ARATH1.698e-2340.77ABC transporter G family member 21 OS=Arabidopsis ... [more]
AB27G_ARATH2.218e-2341.98ABC transporter G family member 27 OS=Arabidopsis ... [more]
AB26G_ARATH3.783e-2341.55ABC transporter G family member 26 OS=Arabidopsis ... [more]
AB25G_ARATH4.941e-2346.34ABC transporter G family member 25 OS=Arabidopsis ... [more]
ABCG8_MOUSE1.438e-2240.00ATP-binding cassette sub-family G member 8 OS=Mus ... [more]
YO075_YEAST2.452e-2244.35Uncharacterized ABC transporter ATP-binding protei... [more]
ABCG8_HUMAN2.452e-2240.00ATP-binding cassette sub-family G member 8 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
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