CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG9_DICDI (ABC transporter G family member 9 OS=Dictyostelium discoideum GN=abcG9 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 40/90 (44.44%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  107 GLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFG 373
            G+S  +++R++I +E++ +P +LFLDEPTSGLD+ +SY ++  I KL   D G+    ++ +IHQPSS +F+ F  + LL+  G+TVYFG
Sbjct:  964 GISVEERKRLTIGVELVAKPHILFLDEPTSGLDAQSSYNIVKFIRKL--ADAGM---PLVCTIHQPSSVLFEHFDRILLLAKGGKTVYFG 1048          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR15_YEAST (ATP-dependent permease PDR15 OS=Saccharomyces cerevisiae GN=PDR15 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.593e-13
Identity = 50/120 (41.67%), Postives = 71/120 (59.17%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFG 373
            +K    E  IK + +Q   +  +G  G +GL+  Q++R++I +E+  RPKLL FLDEPTSGLDS  ++     + KL    HG   + I+ +IHQPS+ + Q F  L  L   GQTVYFG
Sbjct:  996 EKNRYVEEVIKILEMQQYSDAVVGVAG-EGLNVEQRKRLTIGVELAARPKLLVFLDEPTSGLDSQTAWDTCQLMRKL--ATHG---QAILCTIHQPSAILMQQFDRLLFLQKGGQTVYFG 1109          

HSP 2 Score: 66.2402 bits (160), Expect = 5.666e-11
Identity = 39/120 (32.50%), Postives = 64/120 (53.33%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            E+ +   GL    +T++G    +G+SGG+++RVSI    +   +    D  T GLDSA +   +   A   Q D G  + T+  +I+Q S + + LF  +C+L  G  +YFGPA  A ++
Sbjct:  295 EVAMATYGLSHTRDTKVGNDLVRGVSGGERKRVSIAEVAICGARFQCWDNATRGLDSATALEFIR--ALKTQADIGKTAATV--AIYQCSQDAYDLFDKVCVLDDGYQLYFGPAKDAKKY 410          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.081e-13
Identity = 41/120 (34.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            E  +K +GL    +T +G    KG+SGGQK+R++    ++   ++LF+DE ++GLDS+ ++ +   I  +    H +   T+I S+ QPS E ++LF ++ L+S GQ +Y GP     +F
Sbjct:  283 EYVMKILGLDTCADTLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQI---IMYMRHSTHALEGTTVI-SLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDF 398          

HSP 2 Score: 74.3294 bits (181), Expect = 2.081e-13
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   86 IGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +  +         RTI+ +IHQPS ++F+ F  L  +   G+ +Y GP
Sbjct:  962 VGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-----GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1054          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: CDR2_CANAL (Multidrug resistance protein CDR2 OS=Candida albicans GN=CDR2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 46/124 (37.10%), Postives = 75/124 (60.48%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFG 373
            ++K +K +  +  I  + + D  +  +G  G +GL+  Q++R++I +E++ +PKLL FLDEPTSGLDS  ++ +   + KL   DHG   + I+ +IHQPS+ +   F  L  L   G+T YFG
Sbjct:  966 ISKKEKDDYVDYVIDLLEMTDYADALVGVAG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL--ADHG---QAILCTIHQPSALIMAEFDKLLFLQKGGRTAYFG 1083          

HSP 2 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 38/124 (30.65%), Postives = 64/124 (51.61%), Query Frame = 2
Query:   26 KERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            K  A + +   GL    NT +G    +G+SGG+++RVSI    L+   +   D  T GLDSA +   +  +    +    +   T + +I+Q S + ++LF N+ +L  G  ++FG AS A E+
Sbjct:  273 KHMASVYMATYGLSHTRNTNVGNDFVRGVSGGERKRVSIAEASLSGANIQCWDNATRGLDSATALEFIRAL----KTSATILDTTPLIAIYQCSQDAYELFDNVVVLYEGYQIFFGKASKAKEY 392          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: CDR1_CANAL (Multidrug resistance protein CDR1 OS=Candida albicans GN=CDR1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 46/124 (37.10%), Postives = 75/124 (60.48%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFG 373
            ++K +K +  +  I  + + D  +  +G  G +GL+  Q++R++I +E++ +PKLL FLDEPTSGLDS  ++ +   + KL   DHG   + I+ +IHQPS+ +   F  L  L   G+T YFG
Sbjct:  968 ISKKEKDDYVDYVIDLLEMTDYADALVGVAG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL--ADHG---QAILCTIHQPSALIMAEFDRLLFLQKGGRTAYFG 1085          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: BFR1_SCHPO (Brefeldin A resistance protein OS=Schizosaccharomyces pombe GN=bfr1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFG 373
            +K E  E  IK + ++      IG  G+ GL+  Q++R +I +E+  +P LL FLDEPTSGLDS +++ ++  + KL         + I+ +IHQPS+ +F  F  L LL   G+TVYFG
Sbjct:  994 EKYEYVESVIKLLEMESYAEAIIGTPGS-GLNVEQRKRATIGVELAAKPALLLFLDEPTSGLDSQSAWSIVCFLRKLAD-----AGQAILCTIHQPSAVLFDQFDRLLLLQKGGKTVYFG 1107          

HSP 2 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 34/113 (30.09%), Postives = 63/113 (55.75%), Query Frame = 2
Query:   59 GLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            GL    NT++G    +G+SGG+++RV+I     TRP +   D  T GLDS+ ++  ++ +             T   + +Q S ++++LF  +C+L +G+ +Y+GPA  A ++
Sbjct:  292 GLTHTFNTKVGNDFVRGVSGGERKRVTISEGFATRPTIACWDNSTRGLDSSTAFEFVNVLRTCANE----LKMTSFVTAYQASEKIYKLFDRICVLYAGRQIYYGPADKAKQY 400          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR5_YEAST (Pleiotropic ABC efflux transporter of multiple drugs OS=Saccharomyces cerevisiae GN=PDR5 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFG 373
            +K    E  IK + ++   +  +G  G +GL+  Q++R++I +E+  +PKLL FLDEPTSGLDS  ++ +   + KL   +HG   + I+ +IHQPS+ + Q F  L  +   G+TVYFG
Sbjct:  981 EKNRYVEEVIKILEMEKYADAVVGVAG-EGLNVEQRKRLTIGVELTAKPKLLVFLDEPTSGLDSQTAWSICQLMKKL--ANHG---QAILCTIHQPSAILMQEFDRLLFMQRGGKTVYFG 1094          

HSP 2 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   35 AEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            AE+ +   GL    NT++G    +G+SGG+++RVSI    +   K    D  T GLDSA +   +   A   Q D    S T+  +I+Q S + + LF+ +C+L  G  +Y+GPA  A ++
Sbjct:  284 AEVAMATYGLSHTRNTKVGNDIVRGVSGGERKRVSIAEVSICGSKFQCWDNATRGLDSATALEFIR--ALKTQADISNTSATV--AIYQCSQDAYDLFNKVCVLDDGYQIYYGPADKAKKY 400          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG3_MOUSE (ATP-binding cassette sub-family G member 3 OS=Mus musculus GN=Abcg3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.300e-12
Identity = 42/131 (32.06%), Postives = 74/131 (56.49%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            T+T+ +K+ R    ++ + L    N        K  S   ++R SI +E++T   +LFLD+PT+GLD   +  V+  + ++ ++      RTII SI+QP   +F+ F +L L++SG+ ++ GPA  A E+
Sbjct:  151 TITRDEKRRRINEVLELLHLNKEQNI-------KPRSKELRKRTSIAMELVTEHPILFLDDPTTGLDLRTTTDVILVLRRMSKK-----GRTIIFSINQPQYSIFKFFDSLTLVASGKVMFHGPAQDALEY 269          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR10_YEAST (ATP-dependent permease PDR10 OS=Saccharomyces cerevisiae GN=PDR10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   86 IGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFG 373
            I G   +GL+  Q++R++I +E+  +PKLL FLDEPTSGLDS  ++     + KL  R      + I+ +IHQPS+ + Q F  L  L   GQTVYFG
Sbjct: 1056 IVGVPGEGLNVEQRKRLTIGVELAAKPKLLVFLDEPTSGLDSQTAWSTCQLMKKLASR-----GQAILCTIHQPSALLMQEFDRLLFLQEGGQTVYFG 1148          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR11_YEAST (ATP-dependent permease PDR11 OS=Saccharomyces cerevisiae GN=PDR11 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.491e-11
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  110 LSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGPASAANEF 397
            LS  Q++ +SI +E++T+P LL FLDEPTSGLD+ A+  ++  + KL  +      + I+ +IHQPS  V   F N+ LL   G+ VYFG    A ++
Sbjct:  877 LSPTQRKLLSIGVELVTKPSLLLFLDEPTSGLDAEAALTIVQFLKKLSMQ-----GQAILCTIHQPSKSVISYFDNIYLLKRGGECVYFGSLPNACDY 969          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ABCG9_DICDI1.220e-1344.44ABC transporter G family member 9 OS=Dictyostelium... [more]
PDR15_YEAST1.593e-1341.67ATP-dependent permease PDR15 OS=Saccharomyces cere... [more]
AB32G_ARATH2.081e-1334.17ABC transporter G family member 32 OS=Arabidopsis ... [more]
CDR2_CANAL4.635e-1337.10Multidrug resistance protein CDR2 OS=Candida albic... [more]
CDR1_CANAL4.635e-1337.10Multidrug resistance protein CDR1 OS=Candida albic... [more]
BFR1_SCHPO4.635e-1339.17Brefeldin A resistance protein OS=Schizosaccharomy... [more]
PDR5_YEAST1.349e-1238.33Pleiotropic ABC efflux transporter of multiple dru... [more]
ABCG3_MOUSE2.300e-1232.06ATP-binding cassette sub-family G member 3 OS=Mus ... [more]
PDR10_YEAST3.924e-1243.88ATP-dependent permease PDR10 OS=Saccharomyces cere... [more]
PDR11_YEAST1.491e-1140.82ATP-dependent permease PDR11 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
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