CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG8_RAT (ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.203e-22
Identity = 50/125 (40.00%), Postives = 84/125 (67.20%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPA 379
            T ++ Q+ +R E  I E+ L+   NTR+G    +G+SGG++RRVSI +++L  P +L LDEPTSGLDS  ++ ++  +++L +     G+R ++ S+HQP S++F+LF  + L++SG  +Y G A
Sbjct:  200 TFSQAQRDKRVEDVIAELRLRQCANTRVGNTYVRGVSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVRTLSRLAK-----GNRLVLISLHQPRSDIFRLFDLVLLMTSGTPIYLGVA 319          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB19G_ARATH (ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.203e-22
Identity = 57/132 (43.18%), Postives = 87/132 (65.91%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG-PASAANEF 397
            +++K +K ER E  I ++GL++A NT IG  G +G+SGG++RRVSI I+++  P +LFLDEPTSGLDS  ++ V+  + ++ Q         +I SIHQPS+ + +L   L +LS G++V+ G PAS    F
Sbjct:  190 SLSKSKKMERVEALIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQ-----SGSIVIMSIHQPSARIVELLDRLIILSRGKSVFNGSPASLPGFF 316          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: WHITE_LUCCU (Protein white OS=Lucilia cuprina GN=W PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.463e-22
Identity = 57/132 (43.18%), Postives = 82/132 (62.12%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWG-AKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            TMT+ QK +R +  I+++ L    NT IG  G  KGLSGG+++R++   E LT P LL  DEPTSGLDS  +  V+  + KL QR      +T+I +IHQPSSE+F+LF  + L++ G+  + G    A +F
Sbjct:  194 TMTQKQKLQRVDQVIQDLSLIKCQNTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAASVVQVLKKLSQR-----GKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPVEAVDF 320          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata GN=W PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.463e-22
Identity = 55/131 (41.98%), Postives = 82/131 (62.60%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWG-AKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            MT+ QK +R +  I+++ L    NT IG  G  KGLSGG+++R++   E LT P LL  DEPTSGLDS  ++ V+  + KL Q+      +T+I +IHQPSSE+F+LF  + L++ G+  + G    A +F
Sbjct:  197 MTQKQKVQRVDQVIQDLSLGKCQNTLIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-----GKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGEAVDF 322          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ADP1_YEAST (Probable ATP-dependent permease OS=Saccharomyces cerevisiae GN=ADP1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.217e-21
Identity = 56/125 (44.80%), Postives = 80/125 (64.00%), Query Frame = 2
Query:   23 KKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            KK R    ++E+ + D  +  IG    +G+SGG+KRRVSI  E++T P +LFLDEPTSGLD++ +  V+  + +L   D+   +RT++ SIHQP S +F LF  L LLS G+ VY G A   +EF
Sbjct:  501 KKARVYKVLEELRIIDIKDRIIGNEFDRGISGGEKRRVSIACELVTSPLVLFLDEPTSGLDASNANNVIECLVRLSS-DY---NRTLVLSIHQPRSNIFYLFDKLVLLSKGEMVYSGNAKKVSEF 621          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB1G_ARATH (ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.589e-21
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG-PASAANEF 397
            ++ K +KK R +  I ++G+++A  T IG  G +G+SGG++RRVSI I+++  P LLFLDEPTSGLDS +++ V+  + ++ Q         +I SIHQPS  V  L   L  LS G TVY G PAS    F
Sbjct:  199 SLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQ-----SGSIVIMSIHQPSHRVLGLLDRLIFLSRGHTVYSGSPASLPRFF 325          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.711e-21
Identity = 54/131 (41.22%), Postives = 81/131 (61.83%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +++K +KK R +  I ++GL++A  T IG  G +G+SGG++RRVSI  +++  P +LFLDEPTSGLDS ++Y V+  + ++ Q         +I SIHQPS  +  L   L  LS G TVY G  +   +F
Sbjct:  216 SLSKKKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQ-----SGSIVIMSIHQPSYRILGLLDKLIFLSRGNTVYSGSPTHLPQF 341          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: WHT1_CAEEL (ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.541e-21
Identity = 54/124 (43.55%), Postives = 82/124 (66.13%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGA-KGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAA 388
            +++ R E  + +MGL+   +T IG     KGLS G+K+R+S   E+LT PK+LF DEPTSGLD+  + +V+  +  L   D+G+   T+I +IHQPSS V+ LF+N+CL++ G+ +Y GP   A
Sbjct:  106 ERQLRVEQVLTQMGLKKCADTVIGIPNQLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSL--ADNGM---TVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQA 224          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG4_DICDI (ABC transporter G family member 4 OS=Dictyostelium discoideum GN=abcG4 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.541e-21
Identity = 57/127 (44.88%), Postives = 80/127 (62.99%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGG-----WGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            MT  +K  R +  +K++GL   +N++IGG        KGLSGG+K+RVSI   ++T P LLFLDEPTSGLDS  S  VM  + +L +   GV   T++ S+HQP  E+F LF N+ ++  G+ VY G
Sbjct:  324 MTDTEKDIRIKQVLKDVGLDRKLNSKIGGILPGGMIVKGLSGGEKKRVSIGCALVTNPSLLFLDEPTSGLDSLNSLKVMKVLLELTKM-KGV---TVVCSVHQPRPEIFYLFSNIMVVLKGRMVYSG 446          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB18G_ARATH (ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.541e-21
Identity = 56/132 (42.42%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG-PASAANEF 397
            ++ K +K ER E  I ++GL++A +T IG  G +G+SGG++RRVSI I+++  P LLFLDEPTSGLDS  ++ V+  + ++ Q         +I SIHQPS+ +  L   L +LS G++V+ G P S  + F
Sbjct:  182 SLPKSKKMERVETLIDQLGLRNAADTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVLKRIAQ-----SGSVVIMSIHQPSARIIGLLDRLIILSHGKSVFNGSPVSLPSFF 308          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ABCG8_RAT3.203e-2240.00ATP-binding cassette sub-family G member 8 OS=Ratt... [more]
AB19G_ARATH3.203e-2243.18ABC transporter G family member 19 OS=Arabidopsis ... [more]
WHITE_LUCCU5.463e-2243.18Protein white OS=Lucilia cuprina GN=W PE=2 SV=2[more]
WHITE_CERCA5.463e-2241.98Protein white OS=Ceratitis capitata GN=W PE=2 SV=1[more]
ADP1_YEAST1.217e-2144.80Probable ATP-dependent permease OS=Saccharomyces c... [more]
AB1G_ARATH1.589e-2143.94ABC transporter G family member 1 OS=Arabidopsis t... [more]
AB20G_ARATH2.711e-2141.22ABC transporter G family member 20 OS=Arabidopsis ... [more]
WHT1_CAEEL3.541e-2143.55ABC transporter ATP-binding protein/permease wht-1... [more]
ABCG4_DICDI3.541e-2144.88ABC transporter G family member 4 OS=Dictyostelium... [more]
AB18G_ARATH3.541e-2142.42ABC transporter G family member 18 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
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