CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.624e-21
Identity = 54/131 (41.22%), Postives = 81/131 (61.83%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWG-AKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +T  Q+  R +  I+E+ L    +T IG  G  KGLSGG+++R++   E LT P LL  DEPTSGLDS  ++ V+  + KL Q+      +T+I +IHQPSSE+F+LF  + L++ G+  + G  S A +F
Sbjct:  206 LTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQK-----GKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDF 331          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCGM_DICDI (ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.624e-21
Identity = 53/126 (42.06%), Postives = 82/126 (65.08%), Query Frame = 2
Query:   11 TKLQKKERAEMTIKEMGLQDAMNTRIGGW-----GAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            T+ +K ER E  ++++GL    + +IGG        +GLSGG+KRRVSI   ++T P ++ LDEPTSGLD+ ++  VM  + +L Q+     S T+I +IHQP SE+F+LF  + +L+ G+ VY+G
Sbjct:  140 TEKEKHERIEQILEQIGLSHRADAKIGGVLPGGIVLRGLSGGEKRRVSIGCGLVTSPSIVLLDEPTSGLDTTSAMAVMKTLVELTQQK----SVTVICTIHQPRSEIFKLFTKIMVLAEGRLVYYG 261          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.624e-21
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +++K +KK R +  I ++GL+ A  T IG  G +G+SGG++RRVSI  +++  P +LFLDEPTSGLDS ++Y V+  + ++ Q         +I SIHQPS  +  L   L  LS G TVY G  +   +F
Sbjct:  223 SLSKKKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGNDIIHDPIILFLDEPTSGLDSTSAYMVIKVLQRIAQ-----SGSIVIMSIHQPSYRIMGLLDQLIFLSKGNTVYSGSPTHLPQF 348          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB6G_ARATH (ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.888e-21
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +++K +K  R +  I ++GL++A NT IG  G +G+SGG++RRVSI I+++  P LLFLDEPTSGLDS ++  V+  + ++ Q     GS  I+T +HQPS  + +L   L  LS GQTV+ G  +    F
Sbjct:  198 SLSKSKKSLRVQALIDQLGLRNAANTVIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSVIKVLKRIAQS----GSMVIMT-LHQPSYRLLRLLDRLLFLSRGQTVFSGSPAMLPRF 323          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB16G_ARATH (ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.888e-21
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG-PASAANEF 397
            ++ K +KK R +  I ++G+++A  T IG  G +G+SGG++RRVSI I+++  P +LFLDEPTSGLDS +++ V+  + ++ +         II SIHQPS  V  L   L  LS G TV+ G PAS  + F
Sbjct:  197 SLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLKRIAE-----SGSIIIMSIHQPSHRVLSLLDRLIFLSRGHTVFSGSPASLPSFF 323          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG1_MOUSE (ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.295e-20
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 2
Query:   14 KLQKKE--RAEMT---IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPAS 382
            KLQ+K+  R EM    +  +GL    NTR G      LSGGQ++R++I +E++  P ++F DEPTSGLDSA+ + V+S +  L Q     G R+I+ +IHQPS+++F+LF  L +LS GQ VY G  S
Sbjct:  185 KLQEKDEGRREMVKEILTALGLLPCANTRTGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQ-----GGRSIVCTIHQPSAKLFELFDQLYVLSQGQCVYRGKVS 302          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCGO_DICDI (ABC transporter G family member 24 OS=Dictyostelium discoideum GN=abcG24 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = 2
Query:   23 KKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            K++R    ++E+GL    +  IG    +G+SGG++RR+SI  E++  P +LF+DEPTSGLDS ++  +++++ +L   +   G RTII SIHQPS+E+F+ F NL LL  G   + G
Sbjct:  574 KQQRVASVLEELGLTRVADNPIGTSEKRGISGGERRRLSIATELIVDPSILFIDEPTSGLDSHSASELITKLKQL-ANNSTKGQRTIIFSIHQPSAELFEQFDNLILLHQGNPYFSG 689          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCGC_DICDI (ABC transporter G family member 12 OS=Dictyostelium discoideum GN=abcG12 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGA-----KGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            +++++K +R E  I+++GL    +++IGG        KGLSGG+KRRVSI   ++T P L+FLDEPTSGLDS A+  +M  +  L  +  GV   T+I SIHQP  E+F LF+ + ++  G+ +Y G
Sbjct:  162 VSEIEKIKRVEQIIEDIGLTKRTHSKIGGVLPGGILMKGLSGGEKRRVSIGCGLVTNPSLIFLDEPTSGLDSVAALQIMKTLLNLTLK--GV---TVICSIHQPRPEIFALFNKVMVIIKGKMIYSG 283          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG1_HUMAN (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 2.997e-20
Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 2
Query:   14 KLQKKE--RAEMT---IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            KLQ+K+  R EM    +  +GL    NTR G      LSGGQ++R++I +E++  P ++F DEPTSGLDSA+ + V+S +  L Q     G R+II +IHQPS+++F+LF  L +LS GQ VY G
Sbjct:  185 KLQEKDEGRREMVKEILTALGLLSCANTRTGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQ-----GGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRG 299          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.915e-20
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGA-----KGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            +++++K +R E  I+++GL    ++R+GG  A      GLSGG+KRRVSI   ++T P L+FLDEPTSGLDS A+  +M  +  L  +  GV   T+I SIHQP  E+FQL + + ++  G+ +Y G
Sbjct:  161 VSEIEKIKRVEKVIEDVGLTLKRDSRVGGVLAGGVAVTGLSGGEKRRVSIGCGLITNPSLIFLDEPTSGLDSVAALQIMKTLLNLTLK--GV---TVICSIHQPRPEIFQLINKVMVIIKGKMIYSG 282          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
WHITE_DROME4.624e-2141.22Protein white OS=Drosophila melanogaster GN=w PE=1... [more]
ABCGM_DICDI4.624e-2142.06ABC transporter G family member 22 OS=Dictyosteliu... [more]
AB2G_ARATH4.624e-2141.22ABC transporter G family member 2 OS=Arabidopsis t... [more]
AB6G_ARATH7.888e-2142.75ABC transporter G family member 6 OS=Arabidopsis t... [more]
AB16G_ARATH7.888e-2142.42ABC transporter G family member 16 OS=Arabidopsis ... [more]
ABCG1_MOUSE2.295e-2044.53ATP-binding cassette sub-family G member 1 OS=Mus ... [more]
ABCGO_DICDI2.997e-2041.88ABC transporter G family member 24 OS=Dictyosteliu... [more]
ABCGC_DICDI2.997e-2042.52ABC transporter G family member 12 OS=Dictyosteliu... [more]
ABCG1_HUMAN2.997e-2045.60ATP-binding cassette sub-family G member 1 OS=Homo... [more]
ABCG8_DICDI3.915e-2042.52ABC transporter G family member 8 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
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