CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB17G_ARATH (ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.721e-20
Identity = 49/121 (40.50%), Postives = 77/121 (63.64%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVY 367
            +++K +K+ R E  I ++GL    NT IG  G +G+SGG++RRVSI  +++  P +LFLDEPTSGLDS +++ V+  + K+ +         +I SIHQPS  + +    + +LSSGQ V+
Sbjct:  141 SLSKSKKRNRVETLIDQLGLTTVKNTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDEPTSGLDSTSAFMVVQVLKKIAR-----SGSIVIMSIHQPSGRIMEFLDRVIVLSSGQIVF 256          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.537e-19
Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            M   +K +  E  I+ + L    N +IG  G +GLS  Q++RV+I +E+ + P+LLFLDEPTSGLDS+A+  VM+ I K+         R+II +IHQPS+ +F+ F +L LL   G+TVYFGP
Sbjct:  827 MPNEEKIKFVENIIETLNLLKIQNKQIGH-GEEGLSLSQRKRVNIGVELASDPQLLFLDEPTSGLDSSAALKVMNLIKKI-----ASSGRSIICTIHQPSTSIFKQFDHLLLLKRGGETVYFGP 944          

HSP 2 Score: 78.9518 bits (193), Expect = 8.447e-15
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAA 388
            +K  R +  +K + L    +T +G    +G+SGGQK+RV+I +EM+    L  +DEP++GLDS  +  +M    +L      V   + + ++ QP  EV +LF  L ++++G  VYFGP S A
Sbjct:  168 EKNARVDYILKTLDLTRQQDTVVGNEFLRGVSGGQKKRVTIGVEMVKDAGLFLMDEPSTGLDSTTTLELMKHFRELS----NVNQVSSLVALLQPGVEVTKLFDFLMIMNAGHMVYFGPMSDA 286          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.643e-19
Identity = 49/117 (41.88%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   23 KKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            KKE     +  +GL    +TR        LSGGQ++R++I +E++  P ++F DEPTSGLDSA+ + V+S +  L Q     G RTII +IHQPS+++F++F  L +LS GQ ++ G
Sbjct:  177 KKELVTEILTALGLMSCSHTRTAL-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQ-----GGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKG 283          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.259e-18
Identity = 48/124 (38.71%), Postives = 81/124 (65.32%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFGP 376
            +TK +++   +  ++ + L    + +IG  G  GLS  Q++RV+I +E+ + P++LFLDEPTSGLDS  ++ V+  + K+ +    V +RT+I ++HQPS+ +F+ F  L LL   G+T+YFGP
Sbjct: 1032 VTKEERESYVDKIVEVLSLSSIKDLKIGVLG-DGLSVSQRKRVNIGVELASNPEILFLDEPTSGLDSGDAFKVIDVVNKIAK----VMNRTVICTVHQPSAAIFEFFDQLLLLKQGGETIYFGP 1150          

HSP 2 Score: 90.1225 bits (222), Expect = 3.664e-18
Identity = 47/127 (37.01%), Postives = 78/127 (61.42%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAA 388
            +T  +KKE  +  +  +GL+++ NT +G    +G+SGGQK+RV+I + ++    LL +DEPTSGLDS+ S+ ++S + K        G    + ++ QPS ++  LF NL +L+ G+  YFGP + A
Sbjct:  250 LTNEEKKETVDNCMNLLGLKESENTVVGDNFVRGISGGQKKRVTIGVGVIKGSNLLLMDEPTSGLDSSTSFEILSDVKKFVT----YGYSPALITLLQPSVQLTSLFDNLMILNKGRICYFGPMNKA 372          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.806e-18
Identity = 48/124 (38.71%), Postives = 81/124 (65.32%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFGP 376
            +TK +++   +  ++ + L    + +IG  G  GLS  Q++RV+I +E+ + P++LFLDEPTSGLDS  ++ V+  + K+ +    V +RT+I ++HQPS+ +F+ F  L LL   G+T+YFGP
Sbjct: 1007 VTKEEREIFVDKIVEVLSLSSIKDLKIGVLG-NGLSVSQRKRVNIGVELASNPEILFLDEPTSGLDSGDAFKVIDVVNKIAK----VMNRTVICTVHQPSAAIFEFFDQLLLLKKGGETIYFGP 1125          

HSP 2 Score: 88.9669 bits (219), Expect = 8.163e-18
Identity = 47/127 (37.01%), Postives = 78/127 (61.42%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAA 388
            +T+ +K+   +  +K +GL+ A NT +G    +G+SGGQK+RV+I + ++    LL +DEPTSGLDS+ S+ ++S + K        G    + ++ QPS ++  LF NL ++S G+  YFGP + A
Sbjct:  241 LTREEKQVSVDNCMKLLGLKHAENTLVGDNFIRGISGGQKKRVTIGVGVIKGSNLLLMDEPTSGLDSSTSFEILSDVKKFVT----YGYSPALITLLQPSVQLTSLFDNLMIMSKGKICYFGPMNRA 363          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG7_DICDI (ABC transporter G family member 7 OS=Dictyostelium discoideum GN=abcG7 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.786e-18
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGG-----WGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            E  IK++GL     ++IGG        KGLSGG+K+RVSI   ++T P LLFLDEPTSGLDS  +  VM  +  L      +   T+I SIHQP  E++ LF+ + ++  G+ +Y G
Sbjct:  355 EQVIKDIGLTKKSKSKIGGILPGGMIVKGLSGGEKKRVSIGCALVTNPSLLFLDEPTSGLDSLNALKVMKVLMNLTV----IKGVTVICSIHQPRPEIYHLFNKIMIMLKGRMIYCG 467          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG3_DICDI (ABC transporter G family member 3 OS=Dictyostelium discoideum GN=abcG3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.786e-18
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   23 KKERAEMT---IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            +K+R ++    +  + L    NT IG     G+S   +++VSI IE+ + P L+FLDEPTSGLDS+A+  VM+ + K+ +       RT++ +IHQPS E+F+ F  L LL  G+ +YFG
Sbjct:  903 QKDRVKLIDEILSVLSLTKMQNTTIGPNPTLGISLANRKKVSIGIELASDPHLIFLDEPTSGLDSSAALKVMNCVKKIAE-----SGRTVVCTIHQPSQEIFEKFDQLLLLDKGKVIYFG 1017          

HSP 2 Score: 87.0409 bits (214), Expect = 3.102e-17
Identity = 46/126 (36.51%), Postives = 78/126 (61.90%), Query Frame = 2
Query:    2 DTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTR-PKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFG 373
            + +++ ++ ER ++ + ++GL    NT IG    +G+SGGQKRRV+I  E   R P L+ +DEP++GLDSA SY V+S++  + +        +++ S+ QPS E+  LF ++ +L   G  +YFG
Sbjct:  215 ENVSQEEQSERVDLVLDQLGLSHTSNTIIGNQFFRGISGGQKRRVTIANEFTKRSPNLILMDEPSTGLDSATSYNVISKVKTIAKE----AKASVMVSLLQPSVELTNLFDDILILGEGGNLIYFG 336          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: SCRT_DROME (Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.250e-18
Identity = 51/129 (39.53%), Postives = 79/129 (61.24%), Query Frame = 2
Query:   26 KERAEMTIKEM----GLQDAMNTRIG-GWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            KE   + IKE+    GL  A  TRIG G   K LSGG+++R++  +E+L  P +LF DEPT+GLDS ++  +++ + +L Q+       TI+ +IHQPSS++F  F+N+ LL+ G+  + G    A  F
Sbjct:  183 KEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQK-----GTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSF 306          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB3G_ARATH (ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.163e-18
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWG-AKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASA 385
            QK+   E  I+ M L D  N  IGG    KGL  G++RRVSI  E++ RP +LF+DEP   LDS ++  +M  + KL          T++ +I+Q S+EVF LF  +CLLS+G T++FG   A
Sbjct:  225 QKRSVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASM-----GCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLA 342          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.392e-17
Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = 2
Query:    2 DTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            ++  K +K ++A+  + E+GL    +T IGG   +G+SGG+++RVSI  E+L  P LLFLDEPTSGLDS  +  ++S + +L +     G RT++T+IHQP              S G  VYFG  S A ++
Sbjct:  156 NSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELAR-----GGRTVVTTIHQP--------------SKGNPVYFGLGSNAMDY 268          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AB17G_ARATH8.721e-2040.50ABC transporter G family member 17 OS=Arabidopsis ... [more]
ABCG2_DICDI2.537e-1945.16ABC transporter G family member 2 OS=Dictyostelium... [more]
ABCG4_HUMAN9.643e-1941.88ATP-binding cassette sub-family G member 4 OS=Homo... [more]
ABCG6_DICDI1.259e-1838.71ABC transporter G family member 6 OS=Dictyostelium... [more]
ABCG5_DICDI2.806e-1838.71ABC transporter G family member 5 OS=Dictyostelium... [more]
ABCG7_DICDI4.786e-1842.74ABC transporter G family member 7 OS=Dictyostelium... [more]
ABCG3_DICDI4.786e-1840.00ABC transporter G family member 3 OS=Dictyostelium... [more]
SCRT_DROME6.250e-1839.53Protein scarlet OS=Drosophila melanogaster GN=st P... [more]
AB3G_ARATH8.163e-1842.28ABC transporter G family member 3 OS=Arabidopsis t... [more]
AB9G_ARATH1.392e-1739.39ABC transporter G family member 9 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
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