CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.392e-17
Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPA 379
            ++ E     + ++GL    ++ +G    +G+SGG+K+R+S+  E++  P ++F DEPT+GLD+  +  VM  + KL Q  H     T+I SIHQP   V+  F ++ LL+ G  VY GPA
Sbjct:  186 ERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGH-----TVICSIHQPRGSVYAKFDDIVLLTEGTLVYAGPA 300          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB5G_ARATH (ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.392e-17
Identity = 43/116 (37.07%), Postives = 73/116 (62.93%), Query Frame = 2
Query:   26 KERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            + R +  + E+GL+     R+G    +G+SGG++RRVSI +E++  PK+L LDEPTSGLDS ++  ++  +  + +       RTII +IHQP   + + F+++ LL++G T+  G
Sbjct:  155 RSRVKSLVHELGLEAVATARVGDDSVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAE----TRGRTIILTIHQPGFRIVKQFNSVLLLANGSTLKQG 266          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 43/119 (36.13%), Postives = 75/119 (63.03%), Query Frame = 2
Query:   23 KKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFGP 376
            K E  +  ++ + L+D  ++ +G  G  GLS  Q++R++I +E+++ P ++FLDEPT+GLD+ A+  VM  +  + +       RT++ +IHQPS ++F+ F  L L+   GQ VY+GP
Sbjct:  920 KNELVKEVLETVELEDIKDSMVGLPGISGLSTEQRKRLTIAVELVSNPSIIFLDEPTTGLDARAAAIVMRAVKNVAET-----GRTVVCTIHQPSIDIFETFDELILMKDGGQLVYYGP 1033          

HSP 2 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 39/127 (30.71%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   17 LQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            L+   + +  +K +GL    +TR G     G+SGGQKRR++    ++     L +DE ++GLDS+ ++ ++S + +L      +   TI+ S+ QP+ E F+LF ++ LL  G+ +Y  P +   +F
Sbjct:  279 LKNSMQTDYILKILGLDICADTRAGDATRPGISGGQKRRLTTGEIVVGPATTLLMDEISNGLDSSTTFQIVSCLQQLAH----IAGATILISLLQPAPETFELFDDVILLGEGKIIYHAPRADICKF 401          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB24G_ARATH (ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.818e-17
Identity = 49/131 (37.40%), Postives = 77/131 (58.78%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGPASAANEF 397
            ++K  K    E  I  +GLQ   ++ +G    +G+SGGQ++RV++ +EM+  P +LFLDEPTSGLDSA+S  ++  +     R   +    I   +HQPS  +F+ F++L LL+  G TVY G  +   E+
Sbjct:  584 LSKADKVLVVERIIDSLGLQAVRSSLVGTVEKRGISGGQRKRVNVGLEMVMEPSVLFLDEPTSGLDSASSQLLLRAL-----RHEALEGVNICMVVHQPSYTLFKTFNDLVLLAKGGLTVYHGSVNKVEEY 709          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.375e-17
Identity = 51/120 (42.50%), Postives = 79/120 (65.83%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            +K+E  +  ++ + L    ++ IG   + GLS  Q++RV++ IE+ + P+LLFLDEPTSGLDS+A+  VM+ I K+         R++I +IHQPS+ +F+ F +L LL   G+TVYFGP
Sbjct:  924 EKEEFVDNILETLNLLKIQHSLIGDVES-GLSLSQRKRVNMGIELASDPQLLFLDEPTSGLDSSAALKVMNLIKKI-----ASSGRSVICTIHQPSTTIFKKFDHLLLLKRGGETVYFGP 1037          

HSP 2 Score: 82.0333 bits (201), Expect = 9.978e-16
Identity = 45/125 (36.00%), Postives = 76/125 (60.80%), Query Frame = 2
Query:   23 KKERAEMT---IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAA 388
            +KER E+    +  + L+   NT +G    +G+SGGQK+RV+I +E++    LL +DEPT+GLDS+ S  ++++I    Q++      + + S+ QP  E+ +LF  L +++ GQ  YFGP + A
Sbjct:  179 EKERIEIVDNVLDFLDLKHVQNTVVGDEFLRGISGGQKKRVTIGVELVKESNLLLMDEPTNGLDSSISLEMLTKIKNKVQQE----KMSCLISLLQPGLEITKLFDYLMIMNQGQMSYFGPMNQA 299          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG5_MOUSE (ATP-binding cassette sub-family G member 5 OS=Mus musculus GN=Abcg5 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.102e-17
Identity = 43/115 (37.39%), Postives = 71/115 (61.74%), Query Frame = 2
Query:   29 ERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            ++ E  + E+ L    +  IG +   G+S G++RRVSI  ++L  PK++ LDEPT+GLD   +  ++  +A+L +RD     R +I +IHQP SE+FQ F  + +L+ G+ V+ G
Sbjct:  167 KKVEAVMTELSLSHVADQMIGSYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANQIVLLLAELARRD-----RIVIVTIHQPRSELFQHFDKIAILTYGELVFCG 276          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: WHITE_ANOGA (Protein white OS=Anopheles gambiae GN=w PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.291e-17
Identity = 48/126 (38.10%), Postives = 75/126 (59.52%), Query Frame = 2
Query:   23 KKERAEMTIKEMGLQDAMNTRIGGWGA-KGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            K+ R +  ++E+ L    +T IG  G  KGLSGG+++R++   E LT P LL  DEPTSGLDS  ++ V+  +  +  +      +TII +IHQPSSE++ LF  + L++ G+  + G    + EF
Sbjct:  214 KQHRVQEVLQELSLVKCADTIIGAPGRIKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMK-----GKTIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQSAEF 334          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB28G_ARATH (ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.025e-17
Identity = 47/131 (35.88%), Postives = 76/131 (58.02%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTV-YFGPASAANEF 397
            + K +K    E  I+ +GLQ   ++ +G    +G+SGGQ++RV++ +EM+  P LL LDEPTSGLDS++S  ++  +     R   +    I   +HQPS  +F++F +L LL+ G  + Y GP     E+
Sbjct:  606 LPKPEKVLVVERVIESLGLQHVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRAL-----RREALEGVNICMVVHQPSYTLFRMFDDLILLAKGGLICYQGPVKKVEEY 731          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG5_HUMAN (ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.179e-16
Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 2
Query:   26 KERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +++ E  + E+ L    +  IG +   G+S G++RRVSI  ++L  PK++  DEPT+GLD   +  ++  + +L +R     +R ++ +IHQP SE+FQLF  + +LS G+ ++ G  +   +F
Sbjct:  165 QKKVEAVMAELSLSHVADRLIGNYSLGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCMTANQIVVLLVELARR-----NRIVVLTIHQPRSELFQLFDKIAILSFGELIFCGTPAEMLDF 283          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.179e-16
Identity = 45/122 (36.89%), Postives = 72/122 (59.02%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            +TK QKKE  E  ++ + L       +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L L+  G  V +G
Sbjct:  944 ITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYG 1060          

HSP 2 Score: 68.1662 bits (165), Expect = 1.491e-11
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGP 376
            +  +K +GL    +T +G    +G+SGGQ++RV+   EM   P K LF+DE ++GLDS+ ++ ++  I         +   T++ ++ QP+ E F LF +L LLS G  VY GP
Sbjct:  309 DYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTG-EMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVH----LMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGP 417          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AB7G_ARATH1.392e-1736.67ABC transporter G family member 7 OS=Arabidopsis t... [more]
AB5G_ARATH1.392e-1737.07ABC transporter G family member 5 OS=Arabidopsis t... [more]
AB41G_ARATH1.818e-1736.13ABC transporter G family member 41 OS=Arabidopsis ... [more]
AB24G_ARATH1.818e-1737.40ABC transporter G family member 24 OS=Arabidopsis ... [more]
ABCGI_DICDI2.375e-1742.50ABC transporter G family member 18 OS=Dictyosteliu... [more]
ABCG5_MOUSE3.102e-1737.39ATP-binding cassette sub-family G member 5 OS=Mus ... [more]
WHITE_ANOGA5.291e-1738.10Protein white OS=Anopheles gambiae GN=w PE=2 SV=1[more]
AB28G_ARATH9.025e-1735.88ABC transporter G family member 28 OS=Arabidopsis ... [more]
ABCG5_HUMAN1.179e-1633.06ATP-binding cassette sub-family G member 5 OS=Homo... [more]
AB31G_ARATH1.179e-1636.89ABC transporter G family member 31 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
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