CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 46/131 (35.11%), Postives = 76/131 (58.02%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGPASAANEF 397
            M+K  K    E  I+ +GLQ   ++ +G    +G+SGGQ++RV++ +EM+  P LL LDEPT+GLDSA+S  ++  +     R   +    I   +HQPS  ++++F ++ +L+  G TVY G      E+
Sbjct:  572 MSKADKVLIIERVIESLGLQHVRDSLVGTIEKRGISGGQRKRVNVGVEMVMEPSLLILDEPTTGLDSASSQLLLRAL-----RREALEGVNICMVVHQPSYTMYKMFDDMIILAKGGLTVYHGSVKKIEEY 697          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 42/119 (35.29%), Postives = 74/119 (62.18%), Query Frame = 2
Query:   23 KKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFGP 376
            K E  +  ++ + L D  ++ +G  G  GLS  Q++R++I +E++  P ++F+DEPT+GLD+ A+  VM  +  + +       RT++ +IHQPS ++F+ F  L L+ + GQ VY+GP
Sbjct:  923 KNELVKEVLETVELDDIKDSVVGLPGISGLSIEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAET-----GRTVVCTIHQPSIDIFETFDELILMKNGGQLVYYGP 1036          

HSP 2 Score: 71.2478 bits (173), Expect = 1.761e-12
Identity = 37/120 (30.83%), Postives = 70/120 (58.33%), Query Frame = 2
Query:   17 LQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGP 376
            L+   + +  +K +GL    +TR+G     G+SGG+KRR++    ++     LF+DE ++GLDS+ ++ ++S + +L      +   TI+ S+ QP+ E F+LF ++ L+  G+ +Y  P
Sbjct:  282 LKNNLQTDYILKILGLDICADTRVGDATRPGISGGEKRRLTTGELVVGPATTLFMDEISNGLDSSTTFQIVSCLQQLAH----IAEATILISLLQPAPETFELFDDVILMGEGKIIYHAP 397          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB10G_ARATH (ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.626e-16
Identity = 44/123 (35.77%), Postives = 76/123 (61.79%), Query Frame = 2
Query:   14 KLQKKERA---EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            K ++K+ A   +  I+E+GL+   ++RIG     G+SGG++RRVSI +E++  P ++ +DEPTSGLDSA++  V++ +  +  +      +TI+ +IHQP   + +    + LLS+G  V  G
Sbjct:  138 KTKRKDAAAKVKRLIQELGLEHVADSRIGQGSRSGISGGERRRVSIGVELVHDPNVILIDEPTSGLDSASALQVVTLLKDMTIKQ----GKTIVLTIHQPGFRILEQIDRIVLLSNGMVVQNG 256          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.430e-16
Identity = 50/132 (37.88%), Postives = 81/132 (61.36%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +M  ++   + + T++ +GL    +T +G    +G+SGGQK+RV+   EM+  P K+LF+DE ++GLDS+ ++    +I K  Q+   +G  TI+ S+ QP+ E F+LF ++ LLS GQ VY GP     EF
Sbjct:  319 SMEGVESSLQTDYTLRILGLDICADTIVGDQMQRGISGGQKKRVTTG-EMIVGPTKVLFMDEISTGLDSSTTF----QIVKCLQQIVHLGEATILMSLLQPAPETFELFDDIILLSEGQIVYQGPREYVLEF 445          

HSP 2 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 44/121 (36.36%), Postives = 72/121 (59.50%), Query Frame = 2
Query:   14 KLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFG 373
            K+Q  +     ++   L+DA+   +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L LL   GQ +Y G
Sbjct: 1022 KIQFVDEVMELVELDNLKDAL---VGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 1134          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG5_RAT (ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus GN=Abcg5 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.479e-16
Identity = 40/115 (34.78%), Postives = 70/115 (60.87%), Query Frame = 2
Query:   29 ERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            ++ E  + E+ L    +  IG +   G+S G++RRVSI  ++L  PK++ LDEPT+GLD   + +++  + +L +R     +R +I +IHQP SE+F  F  + +L+ G+ V+ G
Sbjct:  167 KKVEAVLTELSLSHVADQMIGNYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANHIVLLLVELARR-----NRIVIVTIHQPRSELFHHFDKIAILTYGELVFCG 276          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.850e-16
Identity = 44/124 (35.48%), Postives = 74/124 (59.68%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            +TK +K    +  ++ + L+   +  +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L LL   GQ +Y GP
Sbjct:  932 VTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGP 1050          

HSP 2 Score: 75.8702 bits (185), Expect = 7.151e-14
Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGP 376
            + T++ +GL    +T +G    +G+SGGQK+RV+   EM+  P K LF+DE ++GLDS+ +Y    +I K  Q        T++ S+ QP+ E F+LF ++ LLS GQ VY GP
Sbjct:  295 DYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTG-EMIVGPTKTLFMDEISTGLDSSTTY----QIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGP 403          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB23G_ARATH (ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.640e-16
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   11 TKLQKKERAEMTIKEMGLQDAMNTRIGGWGA--KGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            T  +++ER E  + ++GL    ++ +G      +G+SGG+++RVSI +EM+  P +L LDEPTSGLDS  S  V+  +A + +       RT++ SIHQPS  +     +  +LS G  ++ G
Sbjct:  160 TAKEREERVESLLSDLGLVLVQDSFVGEGDEEDRGVSGGERKRVSIAVEMIRDPPILLLDEPTSGLDSRNSLQVVELLATMAKSK----QRTVLFSIHQPSYRILDYISDYLILSRGSVIHLG 278          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: SNQ2_YEAST (Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.978e-16
Identity = 47/120 (39.17%), Postives = 77/120 (64.17%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFG 373
            +K +  E  I+ +G+++     +G  G  GL+  Q++++SI +E++ +P LL FLDEPTSGLDS +S+ ++  + KL +       ++I+ +IHQPS+ +F+ F  L LL   GQTVYFG
Sbjct:  964 EKMDYVEKIIRVLGMEEYAEALVGEVGC-GLNVEQRKKLSIGVELVAKPDLLLFLDEPTSGLDSQSSWAIIQLLRKLSK-----AGQSILCTIHQPSATLFEEFDRLLLLRKGGQTVYFG 1077          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.303e-15
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 2
Query:   59 GLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            GL+DA+   +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L LL   GQ +Y GP
Sbjct: 1046 GLKDAI---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVNTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 1144          

HSP 2 Score: 78.5666 bits (192), Expect = 1.103e-14
Identity = 44/123 (35.77%), Postives = 76/123 (61.79%), Query Frame = 2
Query:   32 RAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            + +  ++ +GL    +  +G    +G+SGGQK+R++   EML  P K+LF+DE ++GLDS+ ++ ++  I ++      +G  T++ S+ QP+ E+F+LF ++ LLS GQ VY GP     EF
Sbjct:  340 QTDYILRILGLDMCADVIVGDELRRGISGGQKKRLTTA-EMLVGPTKVLFMDEISTGLDSSTTFQIIRCIQQIVH----MGEATVLVSLLQPAPEIFELFDDVMLLSEGQIVYQGPREHVLEF 457          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB4G_ARATH (ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.303e-15
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 2
Query:   47 IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            +KE+ L    +TR+G    +GLSGG++RRVSI + +L  P++L LDEPTSGLDS +++ V+  +  +         R +I SIHQPS ++  L   + LLS G  VY G
Sbjct:  130 LKELNLTHLAHTRLG----QGLSGGERRRVSIGLSLLHDPEVLLLDEPTSGLDSKSAFDVVQILKSIATS----RERIVILSIHQPSFKILSLIDRVLLLSKGTIVYHG 230          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
WBC30_ARATH1.539e-1635.11Putative white-brown complex homolog protein 30 OS... [more]
AB30G_ARATH1.539e-1635.29ABC transporter G family member 30 OS=Arabidopsis ... [more]
AB10G_ARATH2.626e-1635.77ABC transporter G family member 10 OS=Arabidopsis ... [more]
PDR12_ORYSJ3.430e-1637.88Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
ABCG5_RAT4.479e-1634.78ATP-binding cassette sub-family G member 5 OS=Ratt... [more]
AB29G_ARATH5.850e-1635.48ABC transporter G family member 29 OS=Arabidopsis ... [more]
AB23G_ARATH7.640e-1635.77ABC transporter G family member 23 OS=Arabidopsis ... [more]
SNQ2_YEAST9.978e-1639.17Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 P... [more]
PDR15_ORYSJ1.303e-1541.12Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
AB4G_ARATH1.303e-1542.20ABC transporter G family member 4 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
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