CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB8G_ARATH (ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.223e-15
Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   29 ERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASY---YVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            E     + E+ L    +TR+    A+GLSGG++RRVSI + +L  P  L LDEPTSGLDS +++   +++  IA   Q       RT+I SIHQPS ++  +   L LLS G  VY G   +   F
Sbjct:  137 ETVTSLLSELNLTHLSHTRL----AQGLSGGERRRVSIGLSLLHDPCFLLLDEPTSGLDSKSAFDVIHILKSIAVSRQ-------RTVILSIHQPSFKILSIIDRLLLLSKGTVVYHGRLDSLEGF 251          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.223e-15
Identity = 42/119 (35.29%), Postives = 73/119 (61.34%), Query Frame = 2
Query:   23 KKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            K +  +  ++ + L +  ++ +G  G  GLS  Q++R++I +E++  P ++F+DEPT+GLD+ A+  VM  +  +   D G   RTI+ +IHQPS ++F+ F  L LL   G+ +Y GP
Sbjct:  973 KTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNV--ADTG---RTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGP 1086          

HSP 2 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 2
Query:   17 LQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            LQ+  + +  +K +GL       IG    +G+SGGQK+R++   EM+  P K LF+DE T+GLDS+ ++ +   +  L Q  H + S T++ S+ QP+ E + LF ++ L++ G+ VY GP      F
Sbjct:  315 LQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRLTTA-EMIVGPTKALFMDEITNGLDSSTAFQI---VKSLQQFAH-ISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNF 437          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.903e-15
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:    2 DTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTV-YFG 373
            DTMT   K +  +  +  + L    NT IG     G++  Q++RV+I IEM + P +LFLDEPT+GL S A+  +M  I ++      +  R++I +IHQPS  +F+ F ++ LL+ G  V YFG
Sbjct:  949 DTMTHQDKLDTVDYILDVLELNSIANTLIGKVD-HGITQEQRKRVNIAIEMASLPDILFLDEPTTGLTSVAAELIMQLIKRV-----ALDGRSVICTIHQPSETIFKKFDSILLLTQGGFVAYFG 1067          

HSP 2 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 34/122 (27.87%), Postives = 74/122 (60.66%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFG 373
            +++  KK+ +   +  +G+    +T IG    +G+SGGQK+R+++ +E++   K + +D+ T+GLDS +++ +++ I  + +    V +   + S+ QPS E+F LF ++ ++  G+  +FG
Sbjct:  277 LSREAKKQLSSNILSILGISHVADTYIGNQSIRGISGGQKKRMTVAVELVKGAKAIMIDQATNGLDSTSAFELLNSIQMISK----VSNVPALVSLLQPSPEIFSLFSHILMMKDGEITFFG 394          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.792e-15
Identity = 35/111 (31.53%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   47 IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFGP 376
            ++ + L++  ++ +G  G  G++  Q++R++I +E+++ P ++F+DEPT+GLD+ A+  VM  +  + +       RT++ +IHQPS ++F+ F  L L+ + G+ +Y+GP
Sbjct:  921 LETIELEEIKDSLVGVPGISGVTAEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAET-----GRTVVCTIHQPSIDIFEAFDELILMKNGGKIIYYGP 1026          

HSP 2 Score: 78.9518 bits (193), Expect = 8.447e-15
Identity = 43/116 (37.07%), Postives = 72/116 (62.07%), Query Frame = 2
Query:   32 RAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGP 376
            + +  +K +GL    +TR+G     G+SGGQKRR++   EM+  P K LF+DE ++GLDS+ ++ ++S + +  +   G    TI+ S+ QP+ E F+LF +L L+  G+ +Y GP
Sbjct:  284 QTDYILKILGLTICADTRVGDASRPGISGGQKRRLTTG-EMIVGPIKTLFMDEISNGLDSSTTFQILSCLQQFARLSEG----TILVSLLQPAPETFELFDDLILMGEGKIIYHGP 394          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.792e-15
Identity = 43/123 (34.96%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   11 TKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            TK++  ++   TI+   ++DA+   +G  G  GLS  Q++R+++ +E++  P ++F+DEPT+GLD+ A+  VM  +  + +       RTI+ +IHQPS  +F+ F  L LL   G+ +Y GP
Sbjct:  935 TKIRFVKQVLETIELEEIKDAL---VGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAET-----GRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGP 1049          

HSP 2 Score: 75.0998 bits (183), Expect = 1.220e-13
Identity = 44/128 (34.38%), Postives = 75/128 (58.59%), Query Frame = 2
Query:   17 LQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            L++  + +  +K +GL     T +G    +G+SGGQK+R++   EM+  P K LF+DE T+GLDS+ ++ +   I  L Q  H + + T+  S+ QP+ E + LF ++ L++ G+ VY GP     +F
Sbjct:  280 LKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQKKRLTTA-EMIVGPTKALFMDEITNGLDSSTAFQI---IKSLQQVAH-ITNATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKF 402          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: WHT3_CAEEL (ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.952e-15
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 2
Query:   14 KLQKKERAEMTIKEMGLQDAMNTRIGGWG-AKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            K  ++ER +  I+ + LQ+  + +IG  G  KG+SGG+ RR++   E+L+ P LLF DEPTSGLDS  +  V+  +  L             T IHQP++E+F  F  +  LS G+T + G    + +F
Sbjct:  147 KHTRRERVDEIIEMLRLQNCRDLKIGTPGLVKGISGGEARRLTFACELLSNPSLLFADEPTSGLDSFMAASVVQILKNLANSGR--------TLIHQPTAELFFQFDKIIFLSMGKTAFMGTPHESVKF 267          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: CDR3_CANAL (Opaque-specific ABC transporter CDR3 OS=Candida albicans GN=CDR3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.952e-15
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 2
Query:   86 IGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASA 385
            I G   +GL+  Q++R++I +E++ RPKLL FLDEPTSGLDS  ++ +   I KL   +HG   + I+ +IHQPS+ + + F  L LL  G+TVYFG   A
Sbjct:  974 IVGVPGEGLNVEQRKRLTIAVELVARPKLLVFLDEPTSGLDSQTAWSICKLIRKL--ANHG---QAILCTIHQPSAILLEEFDRLLLLQKGETVYFGEFGA 1069          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.952e-15
Identity = 36/111 (32.43%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   47 IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFGP 376
            ++ + L++  ++ +G  G  GL+  Q++R++I +E+++ P ++F+DEPT+GLD+ A+  VM  +  + +       RT++ +IHQPS ++F+ F  L L+ + G+ +Y+GP
Sbjct:  923 LETIELEEIKDSIVGIPGISGLTTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAET-----GRTVVCTIHQPSIDIFEAFDELILMKNGGKIIYYGP 1028          

HSP 2 Score: 78.9518 bits (193), Expect = 8.447e-15
Identity = 43/116 (37.07%), Postives = 72/116 (62.07%), Query Frame = 2
Query:   32 RAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGP 376
            + +  +K +GL    +TR+G     G+SGGQKRR++   EM+  P K LF+DE ++GLDS+ ++ ++S + +  +   G    TI+ S+ QP+ E F+LF +L L+  G+ +Y GP
Sbjct:  286 QTDYILKILGLTICADTRVGDASRPGISGGQKRRLTTG-EMIVGPIKTLFMDEISNGLDSSTTFQILSCLQQFARLSEG----TILVSLLQPAPETFELFDDLILMGEGKIIYHGP 396          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.468e-15
Identity = 46/127 (36.22%), Postives = 79/127 (62.20%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +K  + +  +K +GL    +T +G    +G+SGGQK+R++   E++  P K LF+DE ++GLDS+ +Y +   +A L Q  H +   TI+ S+ QP+ E F LF ++ L++ G+ +Y GP ++A EF
Sbjct:  314 KKNLQTDYILKILGLDICADTLVGDAMRRGISGGQKKRLTTG-ELIVGPIKALFMDEISNGLDSSTTYQI---VACLQQLAH-ITDATILVSLLQPAPETFDLFDDIILMAEGKILYHGPRNSALEF 435          

HSP 2 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 44/125 (35.20%), Postives = 77/125 (61.60%), Query Frame = 2
Query:    2 DTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFG 373
            D+ TK +  +    TI+  G++  +   +G  G  GLS  Q++R++I +E++  P ++F+DEPT+GLD+ ++  VM  +  +   D G   RTI+ +IHQPS ++F+ F  L LL + G+ +Y+G
Sbjct:  966 DSKTKYEFVKEVIETIELDGIKGML---VGMPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARSAAIVMRAVKNV--ADTG---RTIVCTIHQPSIDIFEAFDELILLKTGGRMIYWG 1082          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.468e-15
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 2
Query:   23 KKERAEMTIKEM----GLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            K E  +M ++E+     L+   N  +G  G  GLS  Q++R++  +E++  P ++F+DEPTSGLD+ A+  VM  + K          RT++ +IHQPS ++F+ F  L L+   GQ +Y GP
Sbjct:  978 KTETRKMFVEEVMELVELKLLRNALVGLPGVDGLSTEQRKRLTTAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTVDT-----GRTVVCTIHQPSIDIFEAFDELLLMKIGGQVIYAGP 1095          

HSP 2 Score: 72.4034 bits (176), Expect = 7.906e-13
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +  +K +GL    +  +G    +G+SGGQK+RV+   EML  P K  F+DE + GLDS+ +Y    +I K  ++   +   T++ S+ QP+ E F LF ++ +LS GQ VY GP     EF
Sbjct:  320 DYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTG-EMLVGPAKAFFMDEISKGLDSSTTY----QIVKFMRQMVHINDITMVISLLQPAPETFDLFDDVIVLSEGQIVYQGPRENVLEF 435          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AB8G_ARATH2.223e-1539.68ABC transporter G family member 8 OS=Arabidopsis t... [more]
AB37G_ARATH2.223e-1535.29ABC transporter G family member 37 OS=Arabidopsis ... [more]
ABCGG_DICDI2.903e-1538.40ABC transporter G family member 16 OS=Dictyosteliu... [more]
AB43G_ARATH3.792e-1531.53ABC transporter G family member 43 OS=Arabidopsis ... [more]
AB33G_ARATH3.792e-1534.96ABC transporter G family member 33 OS=Arabidopsis ... [more]
WHT3_CAEEL4.952e-1536.43ABC transporter ATP-binding protein/permease wht-3... [more]
CDR3_CANAL4.952e-1545.54Opaque-specific ABC transporter CDR3 OS=Candida al... [more]
AB42G_ARATH4.952e-1532.43ABC transporter G family member 42 OS=Arabidopsis ... [more]
PDR3_TOBAC6.468e-1536.22Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
PDR2_NICPL6.468e-1535.77Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
back to top