CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 41/120 (34.17%), Postives = 70/120 (58.33%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            Q+K   +  +  + L     + +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L L+   G+ +Y GP
Sbjct:  965 QRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV-----RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1079          

HSP 2 Score: 76.2554 bits (186), Expect = 5.475e-14
Identity = 48/127 (37.80%), Postives = 75/127 (59.06%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            Q+    +  +K +GL    +T +G    +G+SGGQK+RV+   EML  P K LF+DE ++GLDS+ ++ +++    L Q  H +G  T + ++ QP+ E + LF ++ LLS GQ VY GP     EF
Sbjct:  299 QESVVTDYILKILGLDICADTMVGDGMIRGISGGQKKRVTTG-EMLVGPSKALFMDEISTGLDSSTTFQIVN---SLRQSVHILGG-TALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEF 420          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 44/126 (34.92%), Postives = 74/126 (58.73%), Query Frame = 2
Query:    2 DTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            D+ T+    E     ++   L+DA+   +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L L+   G+ +Y GP
Sbjct:  990 DSNTRKMFIEEVMELVELKPLRDAL---VGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1107          

HSP 2 Score: 71.2478 bits (173), Expect = 1.761e-12
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 2
Query:   47 IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +K +GL+   +T +G    +G+SGGQ++RV+   EML  P    F+DE ++GLDS+ ++ +   +  L Q  H +G  T + S+ QP+ E + LF ++ LLS G  VY GP     EF
Sbjct:  328 LKILGLEICADTMVGDDMVRGISGGQRKRVTTG-EMLVGPANAFFMDEISTGLDSSTTFQI---VKSLRQTIHILGG-TAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEF 440          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 39/98 (39.80%), Postives = 62/98 (63.27%), Query Frame = 2
Query:   86 IGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L L+   GQ +Y GP
Sbjct:  982 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV-----RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1074          

HSP 2 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 44/127 (34.65%), Postives = 73/127 (57.48%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            + K   +  +K +GL    +T +G    +G+SGGQK+RV+   EM+  P K LF+DE ++GLDS+ +Y +++ +    ++   +   T + S+ QP+ E + LF ++ LLS G  VY GP     EF
Sbjct:  307 EAKVVTDYILKILGLDICADTMVGDQMIRGISGGQKKRVTTG-EMIVGPSKALFMDEISTGLDSSTTYSIVNSL----KQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEF 428          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   86 IGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAAN 391
            +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L L+  G  V +G +   N
Sbjct:  982 VGKQGLTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGSLGVN 1078          

HSP 2 Score: 68.1662 bits (165), Expect = 1.491e-11
Identity = 36/114 (31.58%), Postives = 67/114 (58.77%), Query Frame = 2
Query:   35 AEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGP 376
            ++  ++ +GL    +T +G    +G+SGGQK+RV+    ++   K L +DE ++GLDS+ ++ +++ +             T++ S+ QP+ E F+LF +L LLS G+ +Y GP
Sbjct:  302 SDYVLRVLGLDICADTPVGSDMERGVSGGQKKRVTTGEMIIGPRKTLLMDEISTGLDSSTTFQIVNCMRNFVHEMEA----TVLMSLLQPAPETFELFDDLILLSEGKIIYQGP 411          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 2
Query:   14 KLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            K ++K   E  ++ + L       +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L LL   G+ +Y GP
Sbjct:  945 KNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGP 1061          

HSP 2 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 42/118 (35.59%), Postives = 71/118 (60.17%), Query Frame = 2
Query:   47 IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +K +GL+   +T +G    +G+SGGQK+RV+   EML  P + LF+DE ++GLDS+ +Y +++ +       +G    T + S+ QP+ E F LF ++ L++ G+ +Y GP     EF
Sbjct:  305 LKILGLEVCADTMVGDDMLRGISGGQKKRVTTG-EMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNG----TALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEF 417          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: YN99_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YNR070W OS=Saccharomyces cerevisiae GN=YNR070W PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 46/120 (38.33%), Postives = 75/120 (62.50%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLL-SSGQTVYFG 373
            +K E  E  I  + +Q+     +G  G  GL+  Q++++SI +E++ +P LL FLDEPTSGLDS +++ V+  + +L      +  ++I+ +IHQPS+ +F+ F  L LL   GQT+YFG
Sbjct:  840 EKMEYVEKIISILEMQEFSEALVGEIGY-GLNVEQRKKLSIGVELVGKPDLLLFLDEPTSGLDSQSAWAVVKMLKRL-----ALAGQSILCTIHQPSATLFEQFDRLLLLGKGGQTIYFG 953          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: WHITE_ANOAL (Protein white OS=Anopheles albimanus GN=W PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   23 KKERAEMTIKEMGLQDAMNTRIGGWG-AKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            K  R +  ++E+ L    +T IG  G  KGLSGG+++R +   E LT P LL  DEPTS LDS  +  V+  +  +  +      +TII +IHQPSSE++ LF  + L++ G      P  +A+ F
Sbjct:  218 KMHRVDEVLQELSLVKCADTIIGVAGRVKGLSGGERKRTAFRSETLTDPHLLLCDEPTSSLDSFMAQSVLQVLKGMAMK-----GKTIILTIHQPSSELYCLFDRILLVAEGVAFLGSPYQSADFF 338          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   29 ERAEMTIKE-MGLQDAMNTR---IGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFGP 376
            E  +M I+E M L +  + R   +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L L+   G+ +Y GP
Sbjct:  973 EARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1088          

HSP 2 Score: 76.2554 bits (186), Expect = 5.475e-14
Identity = 47/118 (39.83%), Postives = 72/118 (61.02%), Query Frame = 2
Query:   47 IKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +K +GL    +T +G    +G+SGGQ++RV+   EML  P + LF+DE ++GLDS+ +Y +++    L Q  H +G  T + S+ QP+ E + LF ++ LLS GQ VY GP     EF
Sbjct:  309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTG-EMLVGPARALFMDEISTGLDSSTTYQIVN---SLRQTIHILGG-TAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEF 421          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 41/113 (36.28%), Postives = 69/113 (61.06%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFG 373
            E  ++ + L+   N+ +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L L+   GQ +Y G
Sbjct:  981 EEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAG 1088          

HSP 2 Score: 71.2478 bits (173), Expect = 1.761e-12
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +  +K +GL    +   G    +G+SGGQK+R++   EML  P + LF+DE ++GLDS+ ++ +   + +L      +   T+I S+ QP+ E F+LF ++ LLS GQ VY GP     EF
Sbjct:  323 DYVLKILGLDICADILAGDVMRRGISGGQKKRLTTG-EMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVH----ISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEF 438          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 41/113 (36.28%), Postives = 69/113 (61.06%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLS-SGQTVYFG 373
            E  ++ + L+   N+ +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +     R+     RT++ +IHQPS ++F+ F  L L+   GQ +Y G
Sbjct:  980 EEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-----RNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAG 1087          

HSP 2 Score: 69.3218 bits (168), Expect = 6.693e-12
Identity = 43/121 (35.54%), Postives = 71/121 (58.68%), Query Frame = 2
Query:   38 EMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRP-KLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +  +K +GL    +T +G    +G+SGGQ++R++   EML  P   LF+DE ++GLDS+ ++    +I K  ++   +   T++ S+ QP+ E F+LF ++ LLS GQ VY G      EF
Sbjct:  321 DYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTG-EMLVGPATALFMDEISTGLDSSTTF----QICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEF 436          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
TUR2_SPIPO2.458e-1434.17Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR1_ORYSJ2.458e-1434.92Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR1_NICPL2.458e-1439.80Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR13_ORYSJ2.458e-1437.25Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
AB40G_ARATH2.458e-1435.25ABC transporter G family member 40 OS=Arabidopsis ... [more]
YN99_YEAST3.210e-1438.33Uncharacterized ABC transporter ATP-binding protei... [more]
WHITE_ANOAL3.210e-1437.30Protein white OS=Anopheles albimanus GN=W PE=3 SV=... [more]
PDR4_ORYSJ3.210e-1437.19Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
AB39G_ARATH3.210e-1436.28ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB34G_ARATH3.210e-1436.28ABC transporter G family member 34 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
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