CX289040

Overview
NameCX289040
Unique NameCX289040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length428
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1036 contig Ccv1_Contig1036:352..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKI_FELCA (Protein quaking OS=Felis catus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKI_CHICK (Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKI_CANFA (Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKI_BOVIN (Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKIB_XENLA (Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   79 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 149          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKIA_XENLA (Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   79 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 149          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKIA_DANRE (Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.283e-17
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 3
Query:  207 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P  P+V    +L VPV +YP++NFVGRILGPRG + K++EA T C++ +RGR S++D  KEE+ + KP +EHLN
Sbjct:   75 PVGPIVHLQEKLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: QKIB_DANRE (Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.287e-17
Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = 3
Query:  216 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P+ +   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIAQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: HOW_DROME (Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.601e-14
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  207 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 428
            P   VV    ++ VPV ++P+FNFVGRILGPRG + K++E  T C++ +RG+GS++D  KE+  + KP +EHL+
Sbjct:  130 PEGSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLS 203          
BLAST of CX289040 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.756e-13
Identity = 35/71 (49.30%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  222 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 428
            +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D IKEE+L+  D+  + HL+
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLS 128          
The following BLAST results are available for this feature:
BLAST of CX289040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
QKI_FELCA1.473e-1754.93Protein quaking OS=Felis catus GN=QKI PE=2 SV=1[more]
QKI_CHICK1.473e-1754.93Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2[more]
QKI_CANFA1.473e-1754.93Protein quaking OS=Canis familiaris GN=QKI PE=2 SV... [more]
QKI_BOVIN1.473e-1754.93Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1[more]
QKIB_XENLA1.473e-1754.93Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 ... [more]
QKIA_XENLA1.473e-1754.93Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 ... [more]
QKIA_DANRE3.283e-1752.70Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2[more]
QKIB_DANRE4.287e-1753.52Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1[more]
HOW_DROME2.601e-1447.30Protein held out wings OS=Drosophila melanogaster ... [more]
KHDR2_XENTR3.756e-1349.30KH domain-containing, RNA-binding, signal transduc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02008D07SK IF1 Citrus clementina cDNA clone C02008D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289040 ID=CX289040; Name=CX289040; organism=Citrus clementina; type=EST; length=428bp
TCGCACGAGGGGGTTACAATCCAAGTTTTGTTGATCATGAAAGGTTTGAG
CATGATAGCCCATTTAGGTCATTAGGTCAGCCAAATGGAAGACCAATGGA
TTTGGAGGGTTTGTCTGCAATGCAAACTGAGGAAAATGGGCATCTTCAAA
GAATGGCCCCTTTTCAAACTCCTCCTTCAATGGGCTGGCAAGGTATTCCT
GGAATTCCAACCACACCTGTTGTAAAGAGAGTTATTAGACTTGATGTTCC
TGTGGATAAATATCCAAATTTTAATTTTGTCGGCCGGATTTTGGGACCGC
GTGGGAACTCGCTCAAAAGAGTCGAAGCCATGACAGAATGTAGGGTGTTC
ATTAGAGGCCGGGGTTCAGTCAAGGATTCGATAAAGGAAGAAAAACTTAA
AGATAAACCTGGATATGAGCATCTTAAT
back to top