CX289041

Overview
NameCX289041
Unique NameCX289041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLI (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12) GN=arnA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLC (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECOK1 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O1:K1 / APEC GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 76/142 (53.52%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLNWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECOHS (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O9:H4 (strain HS) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECODH (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / DH10B) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECOBW (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / BW2952) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECO8A (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O8 (strain IAI1) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECO81 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O81 (strain ED1a) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 76/142 (53.52%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLNWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECO55 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain 55989 / EAEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 77/142 (54.23%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652
[Close]
BLAST of CX289041 vs. ExPASy Swiss-Prot
Match: ARNA_ECO45 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.409e-18
Identity = 49/142 (34.51%), Postives = 76/142 (53.52%), Query Frame = 2 
Query:    5 NLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 400
            NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT
Sbjct:  518 NLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLNWEPKIDMQETIDETLDFFLRT 652
The following BLAST results are available for this feature:
BLAST of CX289041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_ECOLI6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLC6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOK16.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOHS6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECODH6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOBW6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO8A6.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO816.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO556.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO456.409e-1834.51Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02008D08SK IF1 Citrus clementina cDNA clone C02008D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289041 ID=CX289041; Name=CX289041; organism=Citrus clementina; type=EST; length=403bp
TAACAATCTCCTTCGCCGGCAACCACTCAAGCTTGTCGACGGTGGCCAAT
CTCAGAGGACTTTTATTTACATAAAGGATGCTATTGAAGCTGTTCTATTA
ATGATTGAAAATCCAGCAAGGGCCAATGGTCATATTTTCAATGTGGGCAA
CCCCCACAATGAAGTTACAGTTCGACAGCTTGCTGAGATGATGACTGAGG
TGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGGAGGAGCCAACAGTTGAT
GTCAGCTCCAAAGAATTTTATGGTGAAGGATATGATGATAGTGACAAGAG
AATTCCAGACATGACCATTATAAATCAACAGCTTGGTTGGAACCCGAAGA
CATCACTTTGGGACTTGCTTGAATCAACCCTTACCTATCAGCACAGGACA
TAT
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