CX289049

Overview
NameCX289049
Unique NameCX289049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289049 vs. ExPASy Swiss-Prot
Match: C80A1_BERST (Berbamunine synthase OS=Berberis stolonifera GN=CYP80A1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 39/177 (22.03%), Postives = 84/177 (47.46%), Query Frame = 2 
Query:   14 TTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFSIDLADPTSKTAR-EFKQTNWGMMEEAGKPNLSDFFPVLENLDLQGIRRRMTVYFGKMLDVFD 541
            +++  S+   A E+LQ  D     R          H ++ + W    + W+  RKI ++  FS + L A +  R +   +L+ ++    + G  + +    F   LN++ + +FS D+ + + ++      +   GM+   G  +++ +FPVL   DL G++R+M   F  ++ +++
Sbjct:   75 SSIFASTKEAAMEVLQTNDKVLSGRQPLPCFRIKPHIDYSILWSDSNSYWKKGRKILHTEIFSQKMLQAQEKNRERVAGNLVNFIM--TKVGDVVELRSWLFGCALNVLGHVVFSKDVFEYSDQSDEVGMDKLIHGMLMTGGDFDVASYFPVLARFDLHGLKRKMDEQFKLLIKIWE 249
The following BLAST results are available for this feature:
BLAST of CX289049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
C80A1_BERST5.962e-1122.03Berbamunine synthase OS=Berberis stolonifera GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionC02008E06SK IF1 Citrus clementina cDNA clone C02008E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289049 ID=CX289049; Name=CX289049; organism=Citrus clementina; type=EST; length=588bp
TTCGGCACGAGGGACCACAGTTGTCTTTTCTTCTGCAGCCATGGCCAAAG
AAATCCTTCAAAATCAAGACACATCTTTCTGTAATCGAACAATCCCAGAC
GCAATCTACGCCCACGGCCATCATGAATTCGGGATGCCCTGGCTGCCTGT
GGCGACACTGTGGAGAAATCTTCGAAAAATATGCAACTCACATGCTTTCT
CTAGTCGCCAACTCGATGCCAATCAGCACCTTCGGCGTAAGAAAATCCAA
GATCTTCTAGCTTATGTCCAAGAAAATTGCCGTGCAGGTACAGCAATACA
TATTGGCCAAGCTGCTTTCGACACTACGCTTAATTTGATATCCAACACAA
TTTTTTCTATTGACTTGGCTGATCCCACATCAAAAACTGCGCGAGAGTTT
AAGCAAACAAATTGGGGTATGATGGAAGAAGCTGGAAAGCCTAACTTGTC
CGATTTTTTTCCTGTGCTTGAGAATCTTGACTTGCAAGGTATAAGGCGTC
GCATGACAGTTTATTTTGGCAAGATGCTCGATGTATTTGATCGCTTGATT
GATCAACGATTGAAGCAAAGACAAGAACGAGATTTCAC
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