CX289052

Overview
NameCX289052
Unique NameCX289052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_NEUCR (40S ribosomal protein S27a OS=Neurospora crassa GN=ubi-3 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVL++YKVD  GK++RLR+ECPN  CGAG FMA   DR YCG+C LTYV++K+
Sbjct:   24 LAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKS 77          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_KLULA (40S ribosomal protein S27a OS=Kluyveromyces lactis GN=ubi3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.786e-14
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 488
            LAVL +YKVDD GKV +LRKECPN  CG G F+ANH DR YCGKC  T+  QK
Sbjct:   24 LAVLNYYKVDDEGKVAKLRKECPN--CGPGIFLANHGDRFYCGKCHSTFATQK 74          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_PLUXY (40S ribosomal protein S27a OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.206e-14
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 485
            LAVL+FYKVD++GK+ RLR+EC + +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTSEQCGAGVFMAVMEDRHYCGKCHRTMVFK 75          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_SPOFR (40S ribosomal protein S27a OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.106e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 485
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_MANSE (40S ribosomal protein S27a OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.106e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 485
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27B_SCHPO (40S ribosomal protein S27b OS=Schizosaccharomyces pombe GN=ubi5 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 473
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_SCHPO (40S ribosomal protein S27a OS=Schizosaccharomyces pombe GN=ubi3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 473
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_CAEBR (40S ribosomal protein S27a OS=Caenorhabditis briggsae GN=ubl-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.080e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVL++YKVD++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKVDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_CAEEL (40S ribosomal protein S27a OS=Caenorhabditis elegans GN=ubl-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.023e-13
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVL++YK+D++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
The following BLAST results are available for this feature:
BLAST of CX289052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RUB1_YEAST6.631e-1652.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
RS27A_NEUCR6.631e-1664.8140S ribosomal protein S27a OS=Neurospora crassa GN... [more]
RS27A_KLULA2.786e-1467.9240S ribosomal protein S27a OS=Kluyveromyces lactis... [more]
RS27A_PLUXY6.206e-1463.4640S ribosomal protein S27a OS=Plutella xylostella ... [more]
RS27A_SPOFR8.106e-1463.4640S ribosomal protein S27a OS=Spodoptera frugiperd... [more]
RS27A_MANSE8.106e-1463.4640S ribosomal protein S27a OS=Manduca sexta PE=3 S... [more]
RS27B_SCHPO2.358e-1370.8340S ribosomal protein S27b OS=Schizosaccharomyces ... [more]
RS27A_SCHPO2.358e-1370.8340S ribosomal protein S27a OS=Schizosaccharomyces ... [more]
RS27A_CAEBR3.080e-1359.2640S ribosomal protein S27a OS=Caenorhabditis brigg... [more]
RS27A_CAEEL4.023e-1357.4140S ribosomal protein S27a OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank descriptionC02008E09SK IF1 Citrus clementina cDNA clone C02008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289052 ID=CX289052; Name=CX289052; organism=Citrus clementina; type=EST; length=540bp
GAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCAGATCTTCGTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAA
AGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGT
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