CX289052

Overview
NameCX289052
Unique NameCX289052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289052_ssr312 microsatellite CX289052_ssr312:312..323. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9240 contig Ccv1_Contig9240:1..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.203e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.869e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.987e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.390e-28
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 500
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.390e-28
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 500
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.288e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.895e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 3
Query:   66 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 254
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.068e-26
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVYQKA
Sbjct:   24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.581e-25
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAG 494
            LAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.984e-25
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAG 494
            LAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
The following BLAST results are available for this feature:
BLAST of CX289052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
UBIQ_LEIMA1.203e-3393.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA3.869e-3290.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP1.987e-2880.26Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
RS27A_SOLTU3.390e-2896.4940S ribosomal protein S27a OS=Solanum tuberosum GN... [more]
RS27A_SOLLC3.390e-2896.4940S ribosomal protein S27a OS=Solanum lycopersicum... [more]
UBIL_NPVAC1.288e-2776.32Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE4.895e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RS27A_LUPAL7.068e-2696.3040S ribosomal protein S27a OS=Lupinus albus PE=3 S... [more]
R27AB_ARATH4.581e-2592.7340S ribosomal protein S27a-2 OS=Arabidopsis thalia... [more]
R27AC_ARATH5.984e-2590.9140S ribosomal protein S27a-3 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC02008E09SK IF1 Citrus clementina cDNA clone C02008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289052 ID=CX289052; Name=CX289052; organism=Citrus clementina; type=EST; length=540bp
GAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCAGATCTTCGTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAA
AGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGT
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