CX289052

Overview
NameCX289052
Unique NameCX289052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289052_ssr312 microsatellite CX289052_ssr312:312..323. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9240 contig Ccv1_Contig9240:1..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_ASPOF (40S ribosomal protein S27a OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.970e-24
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 488
            LAVLQFYKVDD+GKV RLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQK
Sbjct:   24 LAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.314e-23
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 3
Query:  330 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 491
            LAVLQFYKVDD+ GKV RLRKECPNA+CGAGTFMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 3
Query:  330 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 491
            LAVLQFYKVDD+ GKV RLRKECPN +CGAGTFMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 3
Query:  330 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 491
            LAVLQFYKVDD+ GKV RLRKECPN ECGAG FMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.379e-21
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVLQFYKVD SGKVQRL+KECP+  CG GTFMA+HFDRHYCGKCG TYV++KA
Sbjct:   24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.168e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 3
Query:   39 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3
Query:   39 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3
Query:   39 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3
Query:   39 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX289052 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.992e-20
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 260
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CX289052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RS27A_ASPOF2.970e-2494.3440S ribosomal protein S27a OS=Asparagus officinali... [more]
RS27A_HORVU7.314e-2391.0740S ribosomal protein S27a OS=Hordeum vulgare GN=M... [more]
RS27A_ORYSJ3.630e-2289.2940S ribosomal protein S27a OS=Oryza sativa subsp. ... [more]
RS27A_MAIZE3.630e-2289.2940S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=... [more]
R27AA_ARATH1.379e-2181.4840S ribosomal protein S27a-1 OS=Arabidopsis thalia... [more]
RUB1_DESAN1.168e-2064.86NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ1.525e-2063.51NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ1.525e-2063.51NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH1.525e-2063.51NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME1.992e-2059.21NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC02008E09SK IF1 Citrus clementina cDNA clone C02008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289052 ID=CX289052; Name=CX289052; organism=Citrus clementina; type=EST; length=540bp
GAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCAGATCTTCGTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAA
AGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGT
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