CX289055

Overview
NameCX289055
Unique NameCX289055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:666..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.175e-30
Identity = 68/118 (57.63%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GI+GTSRP HYHVL DEN F AD LQ+LT NL YTYARCTR+VSIVPPAYYAHL AFRAR+YME E SD                              + +PLP +KENVKR MFYC
Sbjct:  949 GIKGTSRPTHYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYMEDEHSDQ-----------------GSSSSVTTRTDRSTKPLPEIKENVKRFMFYC 1049          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.276e-28
Identity = 66/122 (54.10%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME----PETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            GIQGTS P HY+VL+DEN F+AD LQ+LT +LCYTYARCTRSVSIVPP YYAHLAA RAR Y+E    P+   S                           G  V+PLP +KENVK+ MFYC
Sbjct:  785 GIQGTSHPTHYYVLFDENNFSADALQTLTYHLCYTYARCTRSVSIVPPVYYAHLAASRARHYLEEGSLPDHGSSSASAAGGSRRNDR--------------GVPVKPLPEIKENVKQFMFYC 892          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO7_ORYSJ (Protein argonaute 7 OS=Oryza sativa subsp. japonica GN=AGO7 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.249e-26
Identity = 60/118 (50.85%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            G +GTSRP HYHVLWDEN F +D +Q L +NLCYT+ARCTR VS+VPPAYYAHLAA+R R Y+  E SD+                                PLP L++NVKR+MFYC
Sbjct:  954 GTKGTSRPTHYHVLWDENNFRSDEVQQLIHNLCYTFARCTRPVSLVPPAYYAHLAAYRGRLYL--ERSDTTMYRVSPLQTV---------------------PLPKLRDNVKRLMFYC 1048          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO3_MOUSE (Protein argonaute-3 OS=Mus musculus GN=Eif2c3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.292e-23
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N FTAD LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  756 GIQGTSRPSHYHVLWDDNFFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 825          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO3_HUMAN (Protein argonaute-3 OS=Homo sapiens GN=EIF2C3 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.292e-23
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N FTAD LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  756 GIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 825          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO3_CHICK (Protein argonaute-3 OS=Gallus gallus GN=EIF2C3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.292e-23
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N FTAD LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  756 GIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 825          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO2_XENTR (Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.204e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N+F++D LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  767 GIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 836          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO2_XENLA (Protein argonaute-2 OS=Xenopus laevis GN=eif2c2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.204e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N+F++D LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  758 GIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 827          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO2_RAT (Protein argonaute-2 OS=Rattus norvegicus GN=Eif2c2 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.204e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N+F++D LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  756 GIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 825          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO2_RABIT (Protein argonaute-2 (Fragment) OS=Oryctolagus cuniculus GN=EIF2C2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.204e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N+F++D LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  736 GIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 805          
The following BLAST results are available for this feature:
BLAST of CX289055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AGO12_ORYSJ3.175e-3057.63Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]
AGO11_ORYSJ2.276e-2854.10Protein argonaute 11 OS=Oryza sativa subsp. japoni... [more]
AGO7_ORYSJ1.249e-2650.85Protein argonaute 7 OS=Oryza sativa subsp. japonic... [more]
AGO3_MOUSE1.292e-2371.43Protein argonaute-3 OS=Mus musculus GN=Eif2c3 PE=2... [more]
AGO3_HUMAN1.292e-2371.43Protein argonaute-3 OS=Homo sapiens GN=EIF2C3 PE=1... [more]
AGO3_CHICK1.292e-2371.43Protein argonaute-3 OS=Gallus gallus GN=EIF2C3 PE=... [more]
AGO2_XENTR2.204e-2368.57Protein argonaute-2 OS=Xenopus tropicalis GN=eif2c... [more]
AGO2_XENLA2.204e-2368.57Protein argonaute-2 OS=Xenopus laevis GN=eif2c2 PE... [more]
AGO2_RAT2.204e-2368.57Protein argonaute-2 OS=Rattus norvegicus GN=Eif2c2... [more]
AGO2_RABIT2.204e-2368.57Protein argonaute-2 (Fragment) OS=Oryctolagus cuni... [more]

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Properties
Property NameValue
Genbank descriptionC02008E12SK IF1 Citrus clementina cDNA clone C02008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289055 ID=CX289055; Name=CX289055; organism=Citrus clementina; type=EST; length=506bp
GGAATACAGGGTACAAGCCGTCCTGCCCATTACCATGTTCTATGGGATGA
GAACAAGTTTACAGCTGATGGACTACAGTCCCTCACAAACAACCTCTGCT
ACACATATGCTAGGTGCACTCGTTCTGTTTCCATTGTTCCCCCAGCATAC
TATGCCCACCTTGCAGCATTCCGAGCTCGTTTCTATATGGAGCCAGAGAC
ATCAGACAGTGGTTCAATGACCAGTGGAACTATTGGACGTGGAGGCATGG
GTGGAGGGGTCGGTGCAAGGAGCACACGTGGACCTGGAGTTGGTGCTGCT
GTCAGACCCCTTCCTGCCCTGAAGGAGAATGTCAAGCGGGTTATGTTTTA
CTGTTAGGGTTGCCTTTCCATGAGATAAGAATTCGACATTTGCCCTGATG
AGCCAAGGATGTCAAGATTTAGATCTATTTTGAGAACTCCATAGATGGTT
TGCCTTCCAGTGTATTGCATGCGATACTTGTCTGTAATGGATGCCAGTGA
TATTTT
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