CX289055

Overview
NameCX289055
Unique NameCX289055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:666..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.652e-12
Identity = 43/119 (36.13%), Postives = 58/119 (48.74%), Query Frame = 1 
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRP-LPALKENVKRVMFYC 354
            G+ GT+RP HYHVL DE  F+ D LQ L ++L Y Y R T ++S+V P  YAHLAA +   +++ E                              VG+   P LP L E V+  MF+C
Sbjct:  809 GMIGTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSD----------------ASSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC 911
The following BLAST results are available for this feature:
BLAST of CX289055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AGO4B_ORYSJ6.652e-1236.13Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC02008E12SK IF1 Citrus clementina cDNA clone C02008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289055 ID=CX289055; Name=CX289055; organism=Citrus clementina; type=EST; length=506bp
GGAATACAGGGTACAAGCCGTCCTGCCCATTACCATGTTCTATGGGATGA
GAACAAGTTTACAGCTGATGGACTACAGTCCCTCACAAACAACCTCTGCT
ACACATATGCTAGGTGCACTCGTTCTGTTTCCATTGTTCCCCCAGCATAC
TATGCCCACCTTGCAGCATTCCGAGCTCGTTTCTATATGGAGCCAGAGAC
ATCAGACAGTGGTTCAATGACCAGTGGAACTATTGGACGTGGAGGCATGG
GTGGAGGGGTCGGTGCAAGGAGCACACGTGGACCTGGAGTTGGTGCTGCT
GTCAGACCCCTTCCTGCCCTGAAGGAGAATGTCAAGCGGGTTATGTTTTA
CTGTTAGGGTTGCCTTTCCATGAGATAAGAATTCGACATTTGCCCTGATG
AGCCAAGGATGTCAAGATTTAGATCTATTTTGAGAACTCCATAGATGGTT
TGCCTTCCAGTGTATTGCATGCGATACTTGTCTGTAATGGATGCCAGTGA
TATTTT
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