CX289068

Overview
NameCX289068
Unique NameCX289068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: COMT1_CAPCH (Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.242e-48
Identity = 96/184 (52.17%), Postives = 130/184 (70.65%), Query Frame = 2
Query:    5 DENFAYAFEVALGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSLDDV-DGS-HRLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFE 550
            DE F +A ++A  SVL M +KA + L L EI+AK+GPGA +S SE+AAQLP TKN +AP MLDR+  LLA+Y ++ C+L  + DG   RLY L  V K+   N DGVS+ P+L + QDK  ++SW  L + +++GGVPF++ +G   FEY G DPRFN+VF+  MS+HTTL ++KILE Y GFE
Sbjct:   13 DEAFVFAMQLASASVLPMVLKATVELDLLEIMAKSGPGAFISPSELAAQLP-TKNPEAPVMLDRMFRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKFLTKNGDGVSIAPILLMNQDKVLMESWYHLTDAVLDGGVPFNKAYGMTTFEYHGTDPRFNKVFNCGMSDHTTLSMKKILEDYTGFE 195          
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: COMT2_OCIBA (Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.234e-47
Identity = 94/187 (50.27%), Postives = 130/187 (69.52%), Query Frame = 2
Query:    5 DENFAYAFEVALGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSLDDVD--GSHRLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFEHIK 559
            +ENF +A ++A  SVL M +K+ I L L E+I KAG GA +S +E+AAQL  T N +A  MLDRIL LL SY I+EC L  +   G  RLYGL  V K+   N+DGVS+ P+  + QDK  ++SW  LK+ +++GG+PF++ +G  AFEY G DPRFN+VF+  MSNH+T+ ++KILE Y GF+ +K
Sbjct:   15 EENFLFAMQLASASVLPMVLKSAIELDLLELIKKAGAGAFVSPAELAAQL-LTTNAEAHVMLDRILRLLTSYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNEDGVSMAPLALMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLK 200          
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: COMT1_OCIBA (Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.234e-47
Identity = 93/187 (49.73%), Postives = 129/187 (68.98%), Query Frame = 2
Query:    5 DENFAYAFEVALGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSLDDVD--GSHRLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFEHIK 559
            +ENF +A ++A  SVL M +K+ I L L E+I K+G GA +S  ++AAQLP T N DA  MLDRIL LL SY I+EC L  +   G  RLYGL  V K+   N+DGVS+ P+  + QDK  ++SW  L + +++GG+PF++ +G  AFEY G DPRFN+VF+  MSNH+T+ ++KILE Y GF+ +K
Sbjct:   15 EENFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDLAAQLPTT-NPDAHVMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGVSMAPLTLMNQDKVLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLK 200          
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.234e-47
Identity = 97/187 (51.87%), Postives = 133/187 (71.12%), Query Frame = 2
Query:    5 DENFAYAFEVALGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSL-DDVDGS-HRLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFEHIK 559
            +E   +A ++A  SVL M +K+ + L L EIIAKAGPGA++S  EIA+QLP T N DAP MLDR+L LLA Y I+ CS+    DG   RLYGL  V+KY V N+DGVS+  +  + QDK  ++SW  LK+ +++GG+PF++ +G  AFEY G DPRFN+VF+  MS+H+T+ ++KILE Y GFE +K
Sbjct:   17 EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTT-NPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLK 202          
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.782e-46
Identity = 94/184 (51.09%), Postives = 132/184 (71.74%), Query Frame = 2
Query:    5 DENFAYAFEVALGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSLDDV-DGS-HRLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFE 550
            +E   +A ++A  SVL M +KA I L L EI+AKAGPGA LS +++A+QLP TKN +AP MLDR+L LLASY I+  SL  + DG   RLYGL  V K+   N+DGVS+  +  + QDK  ++SW  LK+ +++GG+PF++ +G  AF+Y G DPRFN+VF+  M++H+T+ ++KILE YKGFE
Sbjct:   17 EEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSPNDLASQLP-TKNPEAPVMLDRMLRLLASYSILTYSLRTLPDGKVERLYGLGPVCKFLTKNEDGVSIAALCLMNQDKVLVESWYHLKDAVLDGGIPFNKAYGMTAFDYHGTDPRFNKVFNKGMADHSTITMKKILETYKGFE 199          
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: COMT1_ZINEL (Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.328e-46
Identity = 89/187 (47.59%), Postives = 128/187 (68.45%), Query Frame = 2
Query:    5 DENFAYAFEVALGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSLDDV-DG-SHRLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFEHIK 559
            D+ F +A ++A  SVL M +K  I L L E IAKAGP   +S+SE+ AQLP   N +AP M+DRI  LLASY ++ C+L +  DG + R YGL  V K+ + N  GVSL P+L + QDK  ++SW  LK+ +++GG+PF++ +G +AFEY G D RFN+VF++ M NH+T+ ++KI+E Y GF  +K
Sbjct:    7 DQAFLFAMQLASASVLPMVLKTAIELDLLETIAKAGPHGSVSSSELVAQLPKVNNPEAPVMIDRICSLLASYSVLTCTLKETADGCAERFYGLAPVCKFLIKNDAGVSLAPLLLMNQDKVLMESWYYLKDPVLDGGIPFNKAYGMSAFEYHGKDQRFNKVFNSGMFNHSTMTMKKIVELYNGFSGLK 193          
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: COMT1_CLABR (Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.328e-46
Identity = 97/187 (51.87%), Postives = 131/187 (70.05%), Query Frame = 2
Query:    5 DENFAYAFEVALGSVLHMTMKAVINLGLFEIIAKA---GPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSLDDV-DGS-HRLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFE 550
            +E   +A ++A  SVL M +KA I L + EI+AK+   G GA +S +EIAAQLP T N DAP MLDR+L LLASY +V CSL ++ DG   RLYGL  V K+   N+DGVSL P+  + QDK  ++SW  LK+ I++GG+PF++ +G  AFEY G DPRFN+VF+  MS+H+T+ ++KI E Y GFE
Sbjct:   19 EEANLFAMQLASASVLPMVLKAAIELDVLEIMAKSIPHGSGAYISPAEIAAQLPTT-NPDAPVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKFLTKNEDGVSLAPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKIFEMYTGFE 204          
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: OMT1_ARATH (Quercetin 3-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.846e-46
Identity = 92/184 (50.00%), Postives = 129/184 (70.11%), Query Frame = 2
Query:    5 DENFAYAFEVALGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSLDDV--DGSHRLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFE 550
            DE   +A ++A  SVL M +K+ + L L EI+AK G  + +S +EIA++LP TKN +AP MLDRIL LL SY ++ CS   +  DG  R+YGL  V KY   N+DGVS+  +  + QDK  ++SW  LK+ I++GG+PF++ +G +AFEY G DPRFN+VF+  MSNH+T+ ++KILE YKGFE
Sbjct:   17 DEAALFAMQLASASVLPMALKSALELDLLEIMAKNG--SPMSPTEIASKLP-TKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFE 197          
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.543e-42
Identity = 83/187 (44.39%), Postives = 124/187 (66.31%), Query Frame = 2
Query:    5 DENFAYAFEVALGSVLHMTMKAVINLGLFEII-AKAGPGAKLSASEIAAQLP-ATKNKDAPTMLDRILGLLASYGIVECSLDDVDGSH-RLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFEHI 556
            +E   YA ++A  S+L MT+K  + LGL E++ A+A  G  L+  E+ A+LP A  N DA  M+DR+L LLASY +V+C ++D DG + R Y    V K+  PN+DGVS+  +  + QDK  ++SW  LK+ +++GG+PF++ +G  AFEY G DPRFN VF+  M NH+ ++ +K+LE Y GFE +
Sbjct:   14 EEACMYAMQLASASILPMTLKNALELGLLEVLQAEAPAGKALAPEEVVARLPVAPTNPDAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPNEDGVSMAALTLMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNRVFNEGMKNHSVIITKKLLEFYTGFEGV 200          
BLAST of CX289068 vs. ExPASy Swiss-Prot
Match: OMT1_CHRAE (Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.322e-41
Identity = 83/177 (46.89%), Postives = 122/177 (68.93%), Query Frame = 2
Query:   20 YAFEVALGSVLHMTMKAVINLGLFEIIAKAGPGAKLSASEIAAQLPATKNKDAPTMLDRILGLLASYGIVECSLDDVDGSHRLYGLNDVSKYFVPNQDGVSLGPVLALIQDKAFLDSWSELKETIIEGGVPFDRVHGTNAFEYLGLDPRFNEVFSTAMSNHTTLVLQKILEAYKGFE 550
            +A ++A  SVL M +K+ I L L EII   G    +S +EIA+ LP T N DAP M+DRIL LL+ Y +V CS+  VD   R+YGL  V KY   NQDGVS+  +  + QDK  ++SW  LK+ +++GG+PF++ +G ++FEY G DPRFN+VF+  MS+H+T+ ++K+ +AY+GF+
Sbjct:    3 FAMQLASASVLPMVLKSAIELDLLEIIR--GQDTCMSPTEIASHLPTT-NPDAPAMVDRILRLLSCYSVVTCSVRSVD-DQRVYGLAPVCKYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMSSFEYHGTDPRFNKVFNRGMSDHSTITMKKVFQAYQGFQ 175          
The following BLAST results are available for this feature:
BLAST of CX289068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
COMT1_CAPCH4.242e-4852.17Caffeic acid 3-O-methyltransferase OS=Capsicum chi... [more]
COMT2_OCIBA1.234e-4750.27Caffeic acid 3-O-methyltransferase 2 OS=Ocimum bas... [more]
COMT1_OCIBA1.234e-4749.73Caffeic acid 3-O-methyltransferase 1 OS=Ocimum bas... [more]
COMT1_MEDSA1.234e-4751.87Caffeic acid 3-O-methyltransferase OS=Medicago sat... [more]
COMT1_ROSCH1.782e-4651.09Caffeic acid 3-O-methyltransferase OS=Rosa chinens... [more]
COMT1_ZINEL2.328e-4647.59Caffeic acid 3-O-methyltransferase OS=Zinnia elega... [more]
COMT1_CLABR2.328e-4651.87Caffeic acid 3-O-methyltransferase OS=Clarkia brew... [more]
OMT1_ARATH8.846e-4650.00Quercetin 3-O-methyltransferase 1 OS=Arabidopsis t... [more]
COMT1_SACOF4.543e-4244.39Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
OMT1_CHRAE1.322e-4146.89Quercetin 3-O-methyltransferase 1 OS=Chrysospleniu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02008G03SK IF1 Citrus clementina cDNA clone C02008G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289068 ID=CX289068; Name=CX289068; organism=Citrus clementina; type=EST; length=561bp
GAGAGACGAAAACTTTGCATATGCCTTTGAAGTGGCGTTGGGTTCAGTGC
TCCACATGACCATGAAAGCAGTAATTAATCTGGGACTTTTCGAGATCATA
GCCAAAGCTGGTCCTGGAGCAAAGCTCTCAGCTTCAGAGATTGCCGCTCA
GTTGCCCGCCACGAAGAACAAAGACGCACCCACGATGCTGGACCGGATAC
TCGGGCTTCTGGCTAGCTATGGCATTGTTGAATGCTCACTTGATGATGTC
GATGGTTCTCACAGGCTATACGGTTTGAATGATGTTTCCAAATACTTTGT
GCCTAATCAAGATGGTGTCTCATTAGGCCCTGTATTGGCCTTAATTCAGG
ACAAGGCCTTTCTCGACAGCTGGTCCGAACTGAAAGAAACTATTATTGAA
GGAGGAGTTCCATTTGACCGAGTCCACGGAACGAACGCTTTCGAGTACCT
AGGATTGGACCCCAGGTTCAATGAAGTTTTCAGCACAGCGATGTCCAACC
ATACCACTTTGGTCCTTCAGAAAATCCTTGAGGCTTACAAGGGTTTCGAG
CACATAAAGCA
back to top