CX289069

Overview
NameCX289069
Unique NameCX289069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11659 contig Ccv1_Contig11659:636..1175. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.336e-16
Identity = 53/172 (30.81%), Postives = 88/172 (51.16%), Query Frame = 2
Query:    8 EVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVG 523
            ++ I  GIL  Y+S+  FS       WR MLG+  IP++L  +G   +P+SPRW   + R  DA++VL +  D+  E+   L +I+E+  + +              G  ++KE         R  +   V +   QQ +G++ ++ Y+P+IFE AG T+  E++  TV VG
Sbjct:  147 QLMITIGILGAYLSDTAFSYTG---AWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQS-------------GWALFKE-----NSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVG 297          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: ARAE_ECOLI (Arabinose-proton symporter OS=Escherichia coli (strain K12) GN=araE PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.336e-16
Identity = 51/172 (29.65%), Postives = 94/172 (54.65%), Query Frame = 2
Query:    8 EVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVG 523
            ++ +  GI+L ++S+  FS       WR MLG+ A+P+VL  +  + +P SPRWL  +GR  +A++VL    D+ E++   L +I+E+                +   +G W   L +    VR  +   + +   QQ +G++ ++ Y+PRIF+ AG T+ +++++AT+ VG
Sbjct:  154 QLMVTLGIVLAFLSDTAFSYSG---NWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRES----------------LKLKQGGW--ALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVG 304          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: ARAE_ECO57 (Arabinose-proton symporter OS=Escherichia coli O157:H7 GN=araE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.336e-16
Identity = 51/172 (29.65%), Postives = 94/172 (54.65%), Query Frame = 2
Query:    8 EVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVG 523
            ++ +  GI+L ++S+  FS       WR MLG+ A+P+VL  +  + +P SPRWL  +GR  +A++VL    D+ E++   L +I+E+                +   +G W   L +    VR  +   + +   QQ +G++ ++ Y+PRIF+ AG T+ +++++AT+ VG
Sbjct:  154 QLMVTLGIVLAFLSDTAFSYSG---NWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRES----------------LKLKQGGW--ALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVG 304          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: ARAE_KLEOX (Arabinose-proton symporter OS=Klebsiella oxytoca GN=araE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16
Identity = 49/172 (28.49%), Postives = 94/172 (54.65%), Query Frame = 2
Query:    8 EVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVG 523
            ++ +  GI++ ++S+  FS       WR MLG+ A+P+V+  +  + +P SPRWL  +GR  +A++VL    D+ E++   L +I+E+                +   +G W   L +    VR  +   + +   QQ +G++ ++ Y+PRIF+ AG T+ +++++AT+ VG
Sbjct:  154 QLMVTLGIVMAFLSDTAFSYSG---NWRAMLGVLALPAVVLIILVIFLPNSPRWLAEKGRHVEAEEVLRMLRDTSEKARDELNEIRES----------------LKLKQGGW--ALFKVNRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMVATLVVG 304          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.660e-16
Identity = 56/168 (33.33%), Postives = 88/168 (52.38%), Query Frame = 2
Query:   17 INGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDK--TSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATV 514
            I GG  L Y+ N  F+ +     WR MLGI  IP++L  V    +PESPRWL  +GR  +AK +L +  +++  E+ +  L D  E   I E+ + + + + K+ + +             VR  ++A VG+  FQQ  GI++V+ YSP I + AG  S    LL ++
Sbjct:  166 ITGGQFLSYLINLAFTDVTGT--WRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETE-ILEEGSSEKINMIKLCKAK------------TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSL 318          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 50/174 (28.74%), Postives = 90/174 (51.72%), Query Frame = 2
Query:    8 EVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFV 529
            ++ I  GIL+  + NYG SK+  H GWR+ LG+ A+P+V+  +G+  +P++P  ++ +G+  +AK++L K              I+ A  +  +  D +  V    + E  WK ++       R  ++    I FFQQ +GI+ ++ Y+P +F+  G    D  L++ V  G V
Sbjct:  177 QMAITIGILVANLINYGTSKMAQH-GWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKK--------------IRGADNVDHEFQDLIDAVEAAKKVENPWKNIM---ESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGF-GDDAALMSAVITGVV 331          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 2
Query:   11 VFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAV 520
            + I GG  L Y+ N  F+++P    WR MLG+  +P+V+  +  L MPESPRWL M+ R A+A +VL +T D     + RL D  +     E+      +  +  R  G    L V  +  +R   +A  G+  FQQ +GI++V+ YSP I + AG  S    L  ++ V
Sbjct:  167 LMITGGQFLSYLVNSAFTQVPGT--WRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYD-----ISRLEDEIDHLSAAEE------EEKQRKRTVGY---LDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIV 320          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: MYCT_MOUSE (Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.298e-15
Identity = 55/174 (31.61%), Postives = 89/174 (51.15%), Query Frame = 2
Query:   11 VFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVL-----DKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVA 517
            +FI GG     V +  FS L    GWR MLG+ AIP+V+  +G L +PESPRWL+ +G+   A+++L     ++T D + +S+           I E+  +     P I R         +   P  R  +V   G+  FQQ SGI++++ YS  I + +G+  +D++L   +A
Sbjct:  184 LFITGGQFFASVVDGAFSYLQKD-GWRYMLGLAAIPAVIQFLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRN--------SIEEEEKEATAAGPIICR---------MLSYPPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGV--EDDRLAIWLA 337          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = 2
Query:   26 GILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKT--SDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFV 529
            GIL   + NYG +K+    GWR+ LG+  IP++L  VGAL + E+P  LV +GRL + K VL +   +D+ E      AD+ EA+ + ++     V+ P        ++ LL R     R  +V AV +  FQQ +GI++++ Y+P +F   G  S D  L + V  G V
Sbjct:  182 GILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRGTDNVEP---EFADLLEASRLAKE-----VKHP--------FRNLLQRRN---RPQLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGS-DASLYSAVVTGAV 331          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 55/172 (31.98%), Postives = 86/172 (50.00%), Query Frame = 2
Query:   11 VFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITS-KDEKLLATVAVG 523
            + I GG  L Y+ N  F   P    WR MLG+ AIP+++     L +PESPRWL    R A+++ +L++   + E     +A +KE+    E  ++D++     ++  G          P VRH + A + +   QQ  GI++V+ YSP I + AG  S K    LA +  G
Sbjct:  162 LLITGGQFLSYLINLAFVHTPGT--WRWMLGVSAIPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPA-EMVEAEIAALKESVR-AETADEDIIGHTFSDKLRGALS------NPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALITSG 323          
The following BLAST results are available for this feature:
BLAST of CX289069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
GALP_ECOL61.336e-1630.81Galactose-proton symporter OS=Escherichia coli O6 ... [more]
ARAE_ECOLI1.336e-1629.65Arabinose-proton symporter OS=Escherichia coli (st... [more]
ARAE_ECO571.336e-1629.65Arabinose-proton symporter OS=Escherichia coli O15... [more]
ARAE_KLEOX3.887e-1628.49Arabinose-proton symporter OS=Klebsiella oxytoca G... [more]
INT2_ARATH8.660e-1633.33Probable inositol transporter 2 OS=Arabidopsis tha... [more]
STP10_ARATH1.477e-1528.74Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
INT1_ARATH3.291e-1534.12Probable inositol transporter 1 OS=Arabidopsis tha... [more]
MYCT_MOUSE4.298e-1531.61Proton myo-inositol cotransporter OS=Mus musculus ... [more]
STP13_ARATH7.331e-1534.71Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
INT3_ARATH7.331e-1531.98Probable inositol transporter 3 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC02008G04SK IF1 Citrus clementina cDNA clone C02008G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289069 ID=CX289069; Name=CX289069; organism=Citrus clementina; type=EST; length=540bp
ATTTCCTGAGGTTTTCATTAACGGCGGGATATTACTTGGCTACGTCTCGA
ACTACGGATTCTCCAAACTACCCCTCCACTTAGGCTGGCGCATGATGCTC
GGAATCGGCGCCATTCCGTCGGTGCTTCCCGCCGTCGGCGCGTTAGCCAT
GCCAGAATCTCCGCGCTGGCTGGTGATGCAAGGCCGACTCGCCGATGCAA
AGAAAGTTCTCGACAAAACCTCGGACTCGAAAGAGGAGTCTATGCTCAGA
CTCGCCGATATCAAAGAAGCAGCCGGCATTCCTGAAGACTGCAACGACGA
CGTCGTTCAAGTGCCGAAAATCAACCGTGGCGAAGGCGTATGGAAAGAGC
TGCTGGTCCGTCCTACACCGGCCGTTCGTCACATCATAGTCGCAGCCGTT
GGTATTCATTTCTTCCAACAAGCATCCGGCATAGACTCTGTCGTTCTTTA
CAGTCCTAGAATCTTTGAAAAAGCTGGGATTACGTCAAAAGACGAAAAGT
TACTCGCTACTGTAGCCGTTGGATTTGTCAAGACCACTTT
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