CX289070

Overview
NameCX289070
Unique NameCX289070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10837 contig Ccv1_Contig10837:55..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289070 vs. ExPASy Swiss-Prot
Match: Y1669_MYCLE (Uncharacterized oxidoreductase ML1669 OS=Mycobacterium leprae GN=ML1669 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   58 NVPEVKLSSASGHRKMPVIGLGSAVDNIDERAMKSAVLEAIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVRALKKSLKTLQIEYVDLYLIHWP 414
            ++P + L+  +    MP++GLG A   + E   + AVL A+++G R  DTA+ YG E A+  AIA +   G+   R +LF+TTKL   D        A   SL  L ++YVDLYLIHWP
Sbjct:    9 SIPSITLNDEN---TMPLLGLGVA--ELSEDETERAVLAALEIGCRLIDTAAAYGNEAAVSRAIAAS---GI--PRAQLFVTTKLATPDQGFTKSQDACNASLDRLGMDYVDLYLIHWP 117          
BLAST of CX289070 vs. ExPASy Swiss-Prot
Match: Y1669_MYCLB (Uncharacterized oxidoreductase MLBr01669 OS=Mycobacterium leprae (strain Br4923) GN=MLBr01669 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.530e-13
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   58 NVPEVKLSSASGHRKMPVIGLGSAVDNIDERAMKSAVLEAIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVRALKKSLKTLQIEYVDLYLIHWP 414
            ++P + L+  +    MP++GLG A   + E   + AVL A+++G R  DTA+ YG E A+  AIA +   G+   R +LF+TTKL   D        A   SL  L ++YVDLYLIHWP
Sbjct:    9 SIPSITLNDEN---TMPLLGLGVA--ELSEDETERAVLAALEIGCRLIDTAAAYGNEAAVSRAIAAS---GI--PRAQLFVTTKLATPDQGFTKSQDACNASLDRLGMDYVDLYLIHWP 117          
BLAST of CX289070 vs. ExPASy Swiss-Prot
Match: YJ66_YEAST (Uncharacterized oxidoreductase YJR096W OS=Saccharomyces cerevisiae GN=YJR096W PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.541e-12
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 1
Query:   73 KLSSASGHRKMPVIGLGSAVDNIDERAMKSAVLEAIKLGYRHFDTASLYGTERALGEAIAEALKLGL-VASREELFITTKLWCSDAHRDLVVRALKKSLKTLQ-IEYVDLYLIHWPM 417
            K    S   K+P I LG+   +I        V E +K GYRHFDTA LYG E+ +G+ I + L        REE+F TTKLW S         A+++ L  +  ++Y+DL LIH P+
Sbjct:    4 KFYKLSNGFKIPSIALGTY--DIPRSQTAEIVYEGVKCGYRHFDTAVLYGNEKEVGDGIIKWLNEDPGNHKREEIFYTTKLWNSQNGYKRAKAAIRQCLNEVSGLQYIDLLLIHSPL 118          
BLAST of CX289070 vs. ExPASy Swiss-Prot
Match: YOF5_CAEEL (Uncharacterized oxidoreductase ZK1290.5 OS=Caenorhabditis elegans GN=ZK1290.5 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.116e-11
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   88 SGHRKMPVIGLGSAVDNIDERAMKSAVLEAIK-LGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVRALKKSLKTLQIEYVDLYLIHWP 414
            S + +MP+IGLG+            AVL +IK  GYR  DTA  YG E+ LG A+           REE+F++TKLW  D   D V  A + S + LQ +Y+D+Y+IH P
Sbjct:    8 SNNVEMPLIGLGTTHSG---GYYHDAVLHSIKKCGYRLIDTAKRYGVEKQLGIAVKNCS-----VPREEMFLSTKLWPVDCG-DEVYNAFQTSCEKLQTDYLDMYMIHMP 108          
The following BLAST results are available for this feature:
BLAST of CX289070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
Y1669_MYCLE4.530e-1340.34Uncharacterized oxidoreductase ML1669 OS=Mycobacte... [more]
Y1669_MYCLB4.530e-1340.34Uncharacterized oxidoreductase MLBr01669 OS=Mycoba... [more]
YJ66_YEAST6.541e-1238.46Uncharacterized oxidoreductase YJR096W OS=Saccharo... [more]
YOF5_CAEEL1.116e-1140.91Uncharacterized oxidoreductase ZK1290.5 OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionC02008G05SK IF1 Citrus clementina cDNA clone C02008G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289070 ID=CX289070; Name=CX289070; organism=Citrus clementina; type=EST; length=501bp
AAACAAACGAACAGGATCAACATGGCTGCGAATTCCGAACCGATGCATGT
ATCCATCAACGTCCCAGAAGTAAAGCTCAGCTCCGCCTCCGGTCACCGGA
AGATGCCGGTGATCGGACTGGGCTCGGCGGTGGACAACATAGATGAAAGG
GCCATGAAATCAGCAGTACTGGAAGCGATCAAGCTCGGTTACAGACACTT
CGACACAGCTTCGCTGTACGGAACAGAGAGGGCCCTGGGAGAAGCAATAG
CTGAAGCACTTAAACTTGGGCTTGTCGCATCTCGCGAAGAGCTCTTCATT
ACTACTAAGCTCTGGTGCAGCGACGCTCATCGTGATCTCGTTGTACGCGC
TCTGAAGAAGTCTCTTAAGACGCTTCAGATTGAATATGTTGACCTGTACC
TCATTCATTGGCCAATGAGTGCTAAGCCGAGTGAGAAATTACGAAACGAT
ATACCCGAAGAAGATCTTGTACCACTGGACTACAACGGTGTGTGGGAAGC
C
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