CX289075

Overview
NameCX289075
Unique NameCX289075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15440 contig Ccv1_Contig15440:577..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.744e-23
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLA-------TSSKNNDEVDGKAGSSA--------LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            KAQVVGWPP+RSFRKN ++        +++ ND+  G +G+++         +VKVSMDGAPYLRK+DLK Y  YQ+LS+AL KMFS FTIG YG  G   ++ ++ESK
Sbjct:   68 KAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESK 174          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSS--KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGS 469
            KAQVVGWPPIRS+RKN++AT+    N ++VD K G   L+VKVSMDGAPYLRKVDLK Y  Y+++S  LEKMF  F+ G+ G+
Sbjct:  121 KAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGA 203          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.423e-22
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSS--KNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYG 466
            KAQVVGWPPIRS+RKN++AT+    + ++ + K G   L+VKVSMDGAPYLRKVDLK Y  Y++LS+ALEKMF  FT G+ G
Sbjct:  114 KAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDG 195          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.061e-22
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLA---TSSKNNDEVDGKAGS------SALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            KAQVVGWPP+R++RKN +    TSS   +    KAG+       A  VKVSMDGAPYLRKVDLK Y  YQ+LS AL KMFS FT+G YG+ G +  + ++ESK
Sbjct:   80 KAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DFMNESK 180          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 8.632e-20
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYG 466
            KAQVVGWPP+RS+RKN + +  K++   +     +A FVKVSMDGAPYLRK+DL+ Y  Y ELS+AL  MFS FT+G++G
Sbjct:   80 KAQVVGWPPVRSYRKNVMVSCQKSSGGPE-----AAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHG 154          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.284e-19
Identity = 49/85 (57.65%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGAL 481
            KAQVVGWPP+RSFRKN LA   K           +A  VKVSMDGAPYLRK+D+  Y  Y ELS A + MF+ FTIG+ GSH  L
Sbjct:   98 KAQVVGWPPVRSFRKNVLAEKCK-----------AAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQL 171          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.627e-18
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSL-------------ATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIG 457
            KAQVVGWPP+RS+RK+ L             A ++    + +  AG+  LFVKVSMDGAPYLRK+DLK Y  Y+EL  ALE MF CF+ G
Sbjct:   51 KAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGG 140          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.736e-18
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSL---ATSSKNNDEVD---------GKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFT 451
            KAQ VGWPP+RSFR+N +   +  SK  +E D             +S+ FVKVSMDGAPYLRKVDLK Y+ Y++LS AL+KMF  FT
Sbjct:   84 KAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT 170          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.736e-18
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSL---ATSSKNNDEVD---------GKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFT 451
            KAQ VGWPP+RSFR+N +   +  SK  +E D             +S+ FVKVSMDGAPYLRKVDLK Y+ Y++LS AL+KMF  FT
Sbjct:   84 KAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT 170          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.378e-17
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQY 463
            KAQ+VGWPP+RS+RKN++  S KN  E +G+     ++VKVSMDGAPYLRK+DL  Y  Y EL  ALE MF  F++G+Y
Sbjct:   62 KAQIVGWPPVRSYRKNNIQ-SKKNESEHEGQG----IYVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMFK-FSVGEY 134          
The following BLAST results are available for this feature:
BLAST of CX289075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IAA16_ARATH3.744e-2351.38Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA3_ORYSJ8.341e-2361.45Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA17_ORYSJ1.423e-2262.20Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA7_ARATH7.061e-2255.34Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA17_ARATH8.632e-2057.50Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA11_ORYSJ4.284e-1957.65Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA31_ORYSJ3.627e-1852.22Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA13_ORYSJ4.736e-1854.02Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI4.736e-1854.02Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA3_ARATH1.378e-1756.96Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC02008G12SK IF1 Citrus clementina cDNA clone C02008G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289075 ID=CX289075; Name=CX289075; organism=Citrus clementina; type=EST; length=509bp
GTTCTTAGAGGGGAAATATCTTTCTAGTTCTGAGCTATTGTCACCCAGGG
CTGCTCCAAACTTGGGGCTGAAGTCAGGTTCTATTCAAGAGAACCTTGGG
CCTCAAACCGCTAAAGGCAAAGAGATGGCCAACCAAAAAGCAGTGCAGGA
AAGGCCTCATGCTAACAATGAGACCATAACAAACCATAATGGTTCTGCAA
ATAACAGTAGCAGTGCACCTGCTGCCAAGGCACAGGTTGTGGGTTGGCCA
CCAATTAGATCATTTAGGAAGAATTCATTGGCCACTTCGTCTAAGAATAA
TGACGAAGTAGATGGAAAAGCAGGTTCCAGTGCTCTGTTTGTTAAGGTCA
GCATGGATGGTGCTCCTTATTTAAGAAAAGTGGACTTGAAAAATTACTCT
AAATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTAC
AATTGGGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTG
AAAGCAAGT
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