CX289075

Overview
NameCX289075
Unique NameCX289075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15440 contig Ccv1_Contig15440:577..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.070e-17
Identity = 50/119 (42.02%), Postives = 66/119 (55.46%), Query Frame = 2
Query:  107 TAKGKEMANQKAVQERPHANNETITXXXXXXXXXXXXXXXKAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQY 463
            TA+  + ++ +A  E   +N   +T               KAQVVGWPPIRS+RKN++    +   E +G      ++VKVSM GAPYLRK+DLK Y  Y EL  ALE MF C   G+Y
Sbjct:   34 TARSNKRSSPEASDEESISNGSDVTKEDNVVPPA------KAQVVGWPPIRSYRKNNVQQKKEEESEGNG------MYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCI-FGEY 139          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: AX22E_PHAAU (Auxin-induced protein 22E OS=Phaseolus aureus GN=AUX22E PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.524e-16
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQY 463
            K QVVGWPPIRSFRKNSL    K  ++ DG    + +++KVSM GAPYLRK+DLK Y  Y EL  AL+ +F C T G+Y
Sbjct:   78 KVQVVGWPPIRSFRKNSL--QQKKVEQGDG----TGMYLKVSMAGAPYLRKIDLKVYKSYPELLKALQNLFKC-TFGEY 149          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.990e-16
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQY 463
            KAQ+VGWPP+RS+RKN++ T  K+  E  G       +VKVSMDGAPYLRK+DL  Y +Y EL  +LE MF  F++G+Y
Sbjct:   60 KAQIVGWPPVRSYRKNNVQTK-KSESEGQGN------YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFK-FSVGEY 130          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.433e-16
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQY 463
            KA++VGWPPIRS+RKNSL            +A    +FVKVSMDGAPYLRK+DL+ Y  Y EL  ALE MF   TIG+Y
Sbjct:   68 KAKIVGWPPIRSYRKNSLH-----------EADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFK-LTIGEY 134          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.876e-16
Identity = 47/79 (59.49%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQY 463
            KA++VGWPPIRS+RKNS+        E DG      +FVKVSMDGAPYLRKVDLK Y  Y EL  ALE MF    IG+Y
Sbjct:   75 KAKIVGWPPIRSYRKNSV-----QEGEGDG------IFVKVSMDGAPYLRKVDLKVYGGYPELLKALETMFK-LAIGEY 141          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.200e-15
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSAL-EKMFSCFTIGQYGS 469
            KA+VVGWPP+R+FRKN+LA  +         + S A FVKV++DGAPYLRKVDL+ Y  Y +L +AL +K FS FTI + G+
Sbjct:   79 KARVVGWPPVRAFRKNALAALA-------AASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGN 153          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.874e-15
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQY 463
            K Q+VGWPP+RS RKN+      NN  V         +VKVSMDGAPYLRK+DLK Y  Y EL  ALE MF  FT+G+Y
Sbjct:   53 KTQIVGWPPVRSNRKNN------NNKNVS--------YVKVSMDGAPYLRKIDLKMYKNYPELLKALENMFK-FTVGEY 116          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA14_ORYSJ (Auxin-responsive protein IAA14 OS=Oryza sativa subsp. japonica GN=IAA14 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.402e-15
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEV-DGKAGSSA----------LFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFT 451
            K QVVGWPP+ S+R+++  +SS +      GK G             L+VKVSMDGAPYLRKVDL+ Y  Y+EL  AL+ +F CF+
Sbjct:   62 KVQVVGWPPVGSYRRSTFQSSSSSTAAAAKGKGGGETDQGRKNKGGGLYVKVSMDGAPYLRKVDLRMYGGYRELRDALDALFGCFS 147          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.863e-14
Identity = 48/100 (48.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSL------------ATSSKNNDE-------VDGKAGSSAL------FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFT 451
            KAQVVGWPP+RS+RK+              A SS NN +           A SSA        VKVSMDGAPYLRK+DL+ Y  Y+EL  ALE MF CF+
Sbjct:   68 KAQVVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCFS 167          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.433e-14
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSAL-EKMFSCFTIGQY 463
            KA+VVGWPP+RSFRKN+LA                A FVKV++DGAPYLRKVDL+ YS Y +L  AL +K FS FTI ++
Sbjct:   74 KARVVGWPPVRSFRKNALA----------------AKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKF 137          
The following BLAST results are available for this feature:
BLAST of CX289075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
AX22D_PHAAU3.070e-1742.02Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
AX22E_PHAAU1.524e-1656.96Auxin-induced protein 22E OS=Phaseolus aureus GN=A... [more]
IAA4_ARATH1.990e-1654.43Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA4_PEA4.433e-1656.96Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
AX22B_PHAAU9.876e-1659.49Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
IAA15_ORYSJ2.200e-1553.66Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA1_ARATH2.874e-1555.70Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
IAA14_ORYSJ6.402e-1547.67Auxin-responsive protein IAA14 OS=Oryza sativa sub... [more]
IAA12_ORYSJ1.863e-1448.00Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]
IAA1_ORYSJ2.433e-1455.00Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionC02008G12SK IF1 Citrus clementina cDNA clone C02008G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289075 ID=CX289075; Name=CX289075; organism=Citrus clementina; type=EST; length=509bp
GTTCTTAGAGGGGAAATATCTTTCTAGTTCTGAGCTATTGTCACCCAGGG
CTGCTCCAAACTTGGGGCTGAAGTCAGGTTCTATTCAAGAGAACCTTGGG
CCTCAAACCGCTAAAGGCAAAGAGATGGCCAACCAAAAAGCAGTGCAGGA
AAGGCCTCATGCTAACAATGAGACCATAACAAACCATAATGGTTCTGCAA
ATAACAGTAGCAGTGCACCTGCTGCCAAGGCACAGGTTGTGGGTTGGCCA
CCAATTAGATCATTTAGGAAGAATTCATTGGCCACTTCGTCTAAGAATAA
TGACGAAGTAGATGGAAAAGCAGGTTCCAGTGCTCTGTTTGTTAAGGTCA
GCATGGATGGTGCTCCTTATTTAAGAAAAGTGGACTTGAAAAATTACTCT
AAATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTAC
AATTGGGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTG
AAAGCAAGT
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