CX289075

Overview
NameCX289075
Unique NameCX289075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15440 contig Ccv1_Contig15440:577..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 41/79 (51.90%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQY 463
            K Q+VGWPP+RS RKN+                +S  +VKVSMDGAPYLRK+DLK Y  Y EL  ALE MF    IG+Y
Sbjct:   58 KTQIVGWPPVRSSRKNN----------------NSVSYVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVM-IGEY 119          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.078e-14
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSL--------ATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFS-CFT 451
            KAQVVGWPP+R++R+N+         AT    +++   +     L+VKVSMDGAPYLRKVDLK    Y+EL  AL+ +F+ CF+
Sbjct:   86 KAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFTKCFS 169          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA18_ORYSJ (Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.022e-12
Identity = 46/100 (46.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  236 VVGWPPIRSFRKNSLATSS------KNNDEVDGKAG---SSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESK 508
            VVGWPPIRSFR+N    SS      + NDE D KA         VK++MDG P  RKVDL+ Y  YQ+LSSA+E++F  F   Q     A   E  +E K
Sbjct:  168 VVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDKAKPICKKRPLVKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDK 267          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCF 448
            K+QVVGWPP+ S+RK +    S N        G+S ++VKVSMDGAP+LRK+DL  +  Y +L+ AL+K+F C+
Sbjct:   62 KSQVVGWPPVCSYRKKN----SMNE-------GASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLFGCY 124          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.884e-12
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSC 445
            K QVVGWPP+ S+RK ++   SK             +++KVSMDGAPYLRK+DL  +  Y EL+ ALEK+F C
Sbjct:   53 KNQVVGWPPVCSYRKKNMNEGSK-------------MYMKVSMDGAPYLRKIDLCLHKGYLELALALEKLFDC 112          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: AX22C_PHAAU (Auxin-induced protein 22C OS=Phaseolus aureus GN=AUX22C PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.625e-12
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTI 454
            K QVVGWPP+ S+RK +     K             L+VKVSMDGAP+LRK+DL  +  Y +L+ AL+K F C+ I
Sbjct:   57 KNQVVGWPPVCSYRKKNTVNEPK-------------LYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGI 119          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: AX22A_PHAAU (Auxin-induced protein 22A OS=Phaseolus aureus GN=AUX22A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.625e-12
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRK-NSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCF 448
            K QVVGWPP+ S+RK NS+  +SK             ++VKVSMDGAP+LRK+DL  +  Y +L+ ALEK+F C+
Sbjct:   62 KNQVVGWPPVCSYRKKNSVNEASK-------------MYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGCY 123          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIG 457
            K+Q VGWPP+ S+R+       KNN+E     G    +VKVSMDG PY+RK+DL + + Y  L + LE +F C  IG
Sbjct:   68 KSQAVGWPPVCSYRRK------KNNEEASKAIG----YVKVSMDGVPYMRKIDLGSSNSYINLVTVLENLFGCLGIG 134          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.476e-11
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  230 AQVVGWPPIRSFRKNSLATSSKNNDEVDGK-------AGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMF 439
            A VVGWPP+RSFR+N  ++SS +     G+        G  A FVKV+MDG P  RKVDL  +  Y ELS+A++++F
Sbjct:   56 APVVGWPPVRSFRRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLF 132          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  227 KAQVVGWPPIRSFRKNSLATSSKNNDEVDGKAGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCF 448
            K+QVVGWPP+ S+R+ +    +K++            +VKVS+DGA +LRK+DL+ Y  YQ+L+SAL+ +F C+
Sbjct:   51 KSQVVGWPPVCSYRRKNSLERTKSS------------YVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFGCY 112          
The following BLAST results are available for this feature:
BLAST of CX289075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IAA2_ARATH5.419e-1451.90Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]
IAA24_ORYSJ7.078e-1447.62Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA18_ORYSJ1.022e-1246.00Auxin-responsive protein IAA18 OS=Oryza sativa sub... [more]
AUX22_SOYBN1.335e-1248.65Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]
IAA6_PEA3.884e-1249.32Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
AX22C_PHAAU6.625e-1246.05Auxin-induced protein 22C OS=Phaseolus aureus GN=A... [more]
AX22A_PHAAU6.625e-1249.33Auxin-induced protein 22A OS=Phaseolus aureus GN=A... [more]
IAA6_ARATH8.652e-1245.45Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA16_ORYSJ1.476e-1146.75Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]
IAA5_ARATH3.288e-1143.24Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC02008G12SK IF1 Citrus clementina cDNA clone C02008G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289075 ID=CX289075; Name=CX289075; organism=Citrus clementina; type=EST; length=509bp
GTTCTTAGAGGGGAAATATCTTTCTAGTTCTGAGCTATTGTCACCCAGGG
CTGCTCCAAACTTGGGGCTGAAGTCAGGTTCTATTCAAGAGAACCTTGGG
CCTCAAACCGCTAAAGGCAAAGAGATGGCCAACCAAAAAGCAGTGCAGGA
AAGGCCTCATGCTAACAATGAGACCATAACAAACCATAATGGTTCTGCAA
ATAACAGTAGCAGTGCACCTGCTGCCAAGGCACAGGTTGTGGGTTGGCCA
CCAATTAGATCATTTAGGAAGAATTCATTGGCCACTTCGTCTAAGAATAA
TGACGAAGTAGATGGAAAAGCAGGTTCCAGTGCTCTGTTTGTTAAGGTCA
GCATGGATGGTGCTCCTTATTTAAGAAAAGTGGACTTGAAAAATTACTCT
AAATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTAC
AATTGGGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTG
AAAGCAAGT
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