CX289075

Overview
NameCX289075
Unique NameCX289075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15440 contig Ccv1_Contig15440:577..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  230 AQVVGWPPIRSFRKNSLATSS--------------KNNDEVDGKAGSS-ALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMF 439
            A VVGWPP+RSFR+N  ++SS              +N D+     G+   +FVK++MDG P  RKVDL  Y  Y +LS+A++K+F
Sbjct:   69 APVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLF 153          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 39/100 (39.00%), Postives = 51/100 (51.00%), Query Frame = 2
Query:  236 VVGWPPIRSFRKNSLATSSKN-----------NDEVDGK----AGSSALFVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGRE 490
            VVGWPP+RSFRKN  +TSS             N   DG+         +FVK++MDG P  RKVDL  Y+ Y++LS  ++K+F      Q       G E
Sbjct:  104 VVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQGEE 203          
BLAST of CX289075 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.294e-11
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  236 VVGWPPIRSFRKNSLATSSKNNDEV-DGKAGSSAL------FVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMF 439
            VVGWPP+R+FR+N LATSSK + E+ +GK  + A       F+K++MDG P  RK+DL  +  Y++LS A++K+F
Sbjct:  139 VVGWPPVRTFRRN-LATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLF 212          
The following BLAST results are available for this feature:
BLAST of CX289075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IAA2_ORYSJ3.288e-1142.35Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA26_ARATH3.288e-1139.00Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA7_ORYSJ4.294e-1148.00Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionC02008G12SK IF1 Citrus clementina cDNA clone C02008G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289075 ID=CX289075; Name=CX289075; organism=Citrus clementina; type=EST; length=509bp
GTTCTTAGAGGGGAAATATCTTTCTAGTTCTGAGCTATTGTCACCCAGGG
CTGCTCCAAACTTGGGGCTGAAGTCAGGTTCTATTCAAGAGAACCTTGGG
CCTCAAACCGCTAAAGGCAAAGAGATGGCCAACCAAAAAGCAGTGCAGGA
AAGGCCTCATGCTAACAATGAGACCATAACAAACCATAATGGTTCTGCAA
ATAACAGTAGCAGTGCACCTGCTGCCAAGGCACAGGTTGTGGGTTGGCCA
CCAATTAGATCATTTAGGAAGAATTCATTGGCCACTTCGTCTAAGAATAA
TGACGAAGTAGATGGAAAAGCAGGTTCCAGTGCTCTGTTTGTTAAGGTCA
GCATGGATGGTGCTCCTTATTTAAGAAAAGTGGACTTGAAAAATTACTCT
AAATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTAC
AATTGGGCAATATGGATCTCATGGGGCTCTGGGCAGGGAGATGCTGAGTG
AAAGCAAGT
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