CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD26_MOUSE (Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.050e-24
Identity = 72/179 (40.22%), Postives = 100/179 (55.87%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+Y+T L+K+ NH  L+     S +  T     C R F   P+ F  +S        +  + SGKM VL +LL H R++ D +++L S  T+ LD+  Q C      Y RLDG+T   +R K+V  FN  S+D    L+S+ AGG GLN +G N ++LFDP WNPAND QA  R +R G
Sbjct:  444 LSYLTVLQKVANHVALLQAASTSKHQETVIKRICDRVFSRFPD-FVQKSKDAAFETLSDPKYSGKMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNS-SQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIG 619          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.517e-23
Identity = 65/179 (36.31%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            ++L  +  L+K CNHP L +D  + G P TT                        D   V  SGKM VL +LL  L+++   R+++ S  T+ LD+    C  R Y Y RLDG T   +RQ  +N +N+P+  +F F+LS++AGG G+NL   + ++L+D DWNP  D QA  R  R G
Sbjct:  444 RLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIG 596          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.517e-23
Identity = 65/179 (36.31%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            ++L  +  L+K CNHP L +D  + G P TT                        D   V  SGKM VL +LL  L+++   R+++ S  T+ LD+    C  R Y Y RLDG T   +RQ  +N +N+P+  +F F+LS++AGG G+NL   + ++L+D DWNP  D QA  R  R G
Sbjct:  445 RLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIG 597          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD26_HUMAN (Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.981e-23
Identity = 71/179 (39.66%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+Y+T L+K+ NH  L+     S    T     C + F   P+ F  +S        +  + SGKM VL +LL H R+  D +++L S  T+ LD+  Q C      Y RLDG+T   +R K+V  FN  ++D    L+S+ AGG GLN +G N +VLFDP WNPAND QA  R +R G
Sbjct:  457 LSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPD-FVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNS-TQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIG 632          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.284e-22
Identity = 59/181 (32.60%), Postives = 99/181 (54.70%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            ++++L  +  L+K CNHP L ++  + G P TT                        D   +  SGKM +L +LL  L+++   R+++ S  ++ LD+    C  R + Y R+DG+TS  +R + ++ +N P+ ++F FLL+++AGG G+NL+  + ++LFD DWNP  D QA  R  R G
Sbjct:  450 KTRLLNIVMQLRKCCNHPYL-FEGAEPGPPYTT------------------------DEHLIFNSGKMIILDKLLKRLKEK-GSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIG 604          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22
Identity = 62/179 (34.64%), Postives = 93/179 (51.96%), Query Frame = 3
Query:    9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            ++L  +  L+K CNHP L +D  + G P TT                        D   V  SGKM  L +LL  ++++   R+++ S  T+ LD+    C  R Y Y RLDG T   +R++ ++ FN P+  +F F+LS++AGG G+NL   + ++L+D DWNP  D QA  R  R G
Sbjct:  452 RLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DEHIVGNSGKMVALDKLLARIKEQ-GSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 604          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22
Identity = 63/180 (35.00%), Postives = 93/180 (51.67%), Query Frame = 3
Query:    6 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S  L  +  LKK CNH                    C    PPE     +G       + +  SGK+ +L +LL  LR+R  +R+++ S   + LD+ A+    + YP+ RLDG+     R++ ++HFN    ++F FLLS++AGG G+NL   + +V+FD DWNP ND QA AR  R G
Sbjct:  749 SGFLNIVMELKKCCNH--------------------CYLIKPPEENERENGQEILL--SLIRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 905          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22
Identity = 66/183 (36.07%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-----RYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  I  L+K+CNHP L+    K  NP                           D    + SGKM V+ +LL  L  +   + +L +   Q LD+  +    +        YLR+DGTT+I  RQ LV+ FN+ S D   FLL+++ GG G+NL G NR+++FDPDWNP+ D QA  R WR G
Sbjct:  616 VLFGIDILRKICNHPDLLDRDTKRHNP---------------------------DYGDPKRSGKMQVVKQLL-LLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD--VFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIG 768          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22
Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +  SGK+ +L +LL  LR+R  +R+++ S   + LD+ A+  + R++P+ RLDG+     R++ ++HFN    ++F FLLS++AGG G+NL   + +V+FD DWNP ND QA AR  R G
Sbjct:  782 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 900          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22
Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +  SGK+ +L +LL  LR+R  +R+++ S   + LD+ A+  + R++P+ RLDG+     R++ ++HFN    ++F FLLS++AGG G+NL   + +V+FD DWNP ND QA AR  R G
Sbjct:  784 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 902          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
RAD26_MOUSE1.050e-2440.22Putative DNA repair and recombination protein RAD2... [more]
SMCA5_MOUSE1.517e-2336.31SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA5_HUMAN1.517e-2336.31SWI/SNF-related matrix-associated actin-dependent ... [more]
RAD26_HUMAN1.981e-2339.66Putative DNA repair and recombination protein RAD2... [more]
ISW2_YEAST1.284e-2232.60ISWI chromatin-remodeling complex ATPase ISW2 OS=S... [more]
SMCA1_MOUSE3.735e-2234.64Probable global transcription activator SNF2L1 OS=... [more]
CHD2_HUMAN3.735e-2235.00Chromodomain-helicase-DNA-binding protein 2 OS=Hom... [more]
RAD26_YEAST6.372e-2236.07DNA repair and recombination protein RAD26 OS=Sacc... [more]
CHD1_MOUSE6.372e-2241.67Chromodomain-helicase-DNA-binding protein 1 OS=Mus... [more]
CHD1_HUMAN6.372e-2241.67Chromodomain-helicase-DNA-binding protein 1 OS=Hom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
back to top