CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD26_MOUSE (Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.050e-24 Identity = 72/179 (40.22%), Postives = 100/179 (55.87%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+Y+T L+K+ NH L+ S + T C R F P+ F +S + + SGKM VL +LL H R++ D +++L S T+ LD+ Q C Y RLDG+T +R K+V FN S+D L+S+ AGG GLN +G N ++LFDP WNPAND QA R +R G Sbjct: 444 LSYLTVLQKVANHVALLQAASTSKHQETVIKRICDRVFSRFPD-FVQKSKDAAFETLSDPKYSGKMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNS-SQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIG 619
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.517e-23 Identity = 65/179 (36.31%), Postives = 94/179 (52.51%), Query Frame = 3 Query: 9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 ++L + L+K CNHP L +D + G P TT D V SGKM VL +LL L+++ R+++ S T+ LD+ C R Y Y RLDG T +RQ +N +N+P+ +F F+LS++AGG G+NL + ++L+D DWNP D QA R R G Sbjct: 444 RLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIG 596
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.517e-23 Identity = 65/179 (36.31%), Postives = 94/179 (52.51%), Query Frame = 3 Query: 9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 ++L + L+K CNHP L +D + G P TT D V SGKM VL +LL L+++ R+++ S T+ LD+ C R Y Y RLDG T +RQ +N +N+P+ +F F+LS++AGG G+NL + ++L+D DWNP D QA R R G Sbjct: 445 RLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DMHLVTNSGKMVVLDKLLPKLKEQ-GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIG 597
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD26_HUMAN (Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.981e-23 Identity = 71/179 (39.66%), Postives = 98/179 (54.75%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFP--PEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+Y+T L+K+ NH L+ S T C + F P+ F +S + + SGKM VL +LL H R+ D +++L S T+ LD+ Q C Y RLDG+T +R K+V FN ++D L+S+ AGG GLN +G N +VLFDP WNPAND QA R +R G Sbjct: 457 LSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPD-FVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNS-TQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIG 632
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW2_YEAST (ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae GN=ISW2 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.284e-22 Identity = 59/181 (32.60%), Postives = 99/181 (54.70%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 ++++L + L+K CNHP L ++ + G P TT D + SGKM +L +LL L+++ R+++ S ++ LD+ C R + Y R+DG+TS +R + ++ +N P+ ++F FLL+++AGG G+NL+ + ++LFD DWNP D QA R R G Sbjct: 450 KTRLLNIVMQLRKCCNHPYL-FEGAEPGPPYTT------------------------DEHLIFNSGKMIILDKLLKRLKEK-GSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIG 604
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22 Identity = 62/179 (34.64%), Postives = 93/179 (51.96%), Query Frame = 3 Query: 9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 ++L + L+K CNHP L +D + G P TT D V SGKM L +LL ++++ R+++ S T+ LD+ C R Y Y RLDG T +R++ ++ FN P+ +F F+LS++AGG G+NL + ++L+D DWNP D QA R R G Sbjct: 452 RLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DEHIVGNSGKMVALDKLLARIKEQ-GSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 604
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD2_HUMAN (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22 Identity = 63/180 (35.00%), Postives = 93/180 (51.67%), Query Frame = 3 Query: 6 SKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S L + LKK CNH C PPE +G + + SGK+ +L +LL LR+R +R+++ S + LD+ A+ + YP+ RLDG+ R++ ++HFN ++F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G Sbjct: 749 SGFLNIVMELKKCCNH--------------------CYLIKPPEENERENGQEILL--SLIRSSGKLILLDKLLTRLRER-GNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 905
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22 Identity = 66/183 (36.07%), Postives = 92/183 (50.27%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRER-----RYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L I L+K+CNHP L+ K NP D + SGKM V+ +LL L + + +L + Q LD+ + + YLR+DGTT+I RQ LV+ FN+ S D FLL+++ GG G+NL G NR+++FDPDWNP+ D QA R WR G Sbjct: 616 VLFGIDILRKICNHPDLLDRDTKRHNP---------------------------DYGDPKRSGKMQVVKQLL-LLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFD--VFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIG 768
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_MOUSE (Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1 PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22 Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = 3 Query: 186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 + SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+ R++ ++HFN ++F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G Sbjct: 782 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 900
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22 Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = 3 Query: 186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 + SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+ R++ ++HFN ++F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G Sbjct: 784 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 902 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |