CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_NEOFI (Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L  LL  L+     R++L    T+ +DL  +    R Y Y RLDG+T +  R+  V  F     + F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1417 SGKLAKLDELLRELKAG-GHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQ-RPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1531          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 3
Query:  213 LARLLGHLRQRT--DDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            LARL   LR+      R++L    T+ +DL  +    R+Y YLRLDG++ I++R+ +V  +   + D F F LS++AGG G+NL   + ++ +D DWNP++D QA  R  R G
Sbjct: 1455 LARLDSLLRELKAGGHRVLLYFQMTKMMDLIEEYLIFRQYKYLRLDGSSPIAERRDMVTSWQT-NPDIFVFCLSTRAGGLGINLTAADTVIFYDHDWNPSSDAQAMDRAHRVG 1566          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_ASPTN (Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ino80 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L  LL  L+     R++L    T+ +DL  +    R Y Y RLDG+T +  R+  V  F     + F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1398 SGKLAKLDELLRELKAG-GHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQ-RPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1512          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_ASPOR (Putative DNA helicase ino80 OS=Aspergillus oryzae GN=ino80 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L  LL  L+     R++L    T+ +DL  +    R Y Y RLDG+T +  R+  V  F     + F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1215 SGKLAKLDELLRELKAG-GHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQ-RPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1329          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_ASPNC (Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ino80 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L  LL  L+     R++L    T+ +DL  +    R Y Y RLDG+T +  R+  V  F     + F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1405 SGKLAKLDELLRELKAG-GHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQ-RPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1519          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_ASPFU (Putative DNA helicase ino80 OS=Aspergillus fumigatus GN=ino80 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L  LL  L+     R++L    T+ +DL  +    R Y Y RLDG+T +  R+  V  F     + F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1417 SGKLAKLDELLRELKAG-GHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQ-RPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1531          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_ASHGO (Putative DNA helicase INO80 OS=Ashbya gossypii GN=INO80 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S K+  L  LL  L+   + R+++    T+ +DL  +    R+Y ++RLDG++ +  R+ LV+ +   S D F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1239 SAKLKKLDELLVRLKAG-EHRVLIYFQMTRMMDLIEEYLTYRQYKHIRLDGSSKLEDRRDLVHDWQTKS-DIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLG 1353          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  LA LL  L      R ++ +  T+ LD+  Q        Y+RLDG T I +RQ L   FN   K    F+LS+++GG G+NL G + ++ +D DWNP+ DKQ   R  R G
Sbjct: 1469 GKLQRLATLLQDLIAG-GHRALIFTQMTKVLDVLEQFLNIHGLRYMRLDGATKIEQRQLLTERFNTDPKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIG 1582          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: YFK8_YEAST (Uncharacterized ATP-dependent helicase YFR038W OS=Saccharomyces cerevisiae GN=YFR038W PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            ++ SGK+ +L +L+  L      ++++ S +   LDL    C    +   R+DG+ +   R+  +  FN        FLLS++A G G+NL+G + +VLFD DWNP  D QA  R  R G
Sbjct:  599 LKTSGKLQILQKLIPPLISE-GHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIG 717          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: YFC1_SCHPO (Uncharacterized ATP-dependent helicase C25A8.01c OS=Schizosaccharomyces pombe GN=SPAC25A8.01c PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  174 DGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            D  W++ + K+  L +LL +  +   DR+VL S +TQ LD+   + +     +LR DG+T +  RQ L++ F         FLLS+KAGG G+NL   N ++L+D  +NP +D QA  R  R G
Sbjct:  754 DEPWMDAT-KVRKLKKLLTNAVEN-GDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESIN-VFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVG 874          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
INO80_NEOFI1.681e-1438.46Putative DNA helicase ino80 OS=Neosartorya fischer... [more]
INO80_CRYNE1.681e-1438.94Putative DNA helicase INO80 OS=Cryptococcus neofor... [more]
INO80_ASPTN1.681e-1438.46Putative DNA helicase ino80 OS=Aspergillus terreus... [more]
INO80_ASPOR1.681e-1438.46Putative DNA helicase ino80 OS=Aspergillus oryzae ... [more]
INO80_ASPNC1.681e-1438.46Putative DNA helicase ino80 OS=Aspergillus niger (... [more]
INO80_ASPFU1.681e-1438.46Putative DNA helicase ino80 OS=Aspergillus fumigat... [more]
INO80_ASHGO1.681e-1436.75Putative DNA helicase INO80 OS=Ashbya gossypii GN=... [more]
SWR1_YARLI2.195e-1438.79Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 ... [more]
YFK8_YEAST3.744e-1434.17Uncharacterized ATP-dependent helicase YFR038W OS=... [more]
YFC1_SCHPO3.744e-1437.10Uncharacterized ATP-dependent helicase C25A8.01c O... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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