CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_GIBZE (Putative DNA helicase INO80 OS=Gibberella zeae GN=INO80 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.890e-14
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L  LL  L+     R++L    T+ +D+  +    R Y Y RLDG+T +  R+  V+ F     + F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1625 SGKLAKLDDLLFKLKSE-GHRVLLYFQMTRMIDMMEEYLTYRNYKYCRLDGSTKLEDRRDTVHDFQT-RPEIFIFLLSTRAGGLGINLTTADTVIFYDSDWNPTIDSQAMDRAHRLG 1739          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  L  L+  L++    RI++ +  T+ LD+         Y YLRLDG T +  RQ L   FN  ++   AF+LS+++GG G+NL G + ++ +D DWN A + Q   R  R G
Sbjct: 1533 GKLQQLDILMRRLKEG-GHRILIFTQMTRVLDILESFLNYHGYRYLRLDGATKVESRQALTEQFNRDARIS-AFILSTRSGGLGINLTGADTVLFYDLDWNAAIEAQCMDRAHRIG 1646          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_YEAST (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae GN=INO80 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.089e-13
Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S K+  L  LL  L+     R+++    T+ +DL  +    R+Y ++RLDG++ +  R+ LV+ +   + + F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1298 SAKLRKLDELLVKLKSE-GHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQT-NPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1412          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_YEAS7 (Putative DNA helicase INO80 OS=Saccharomyces cerevisiae (strain YJM789) GN=INO80 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.089e-13
Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S K+  L  LL  L+     R+++    T+ +DL  +    R+Y ++RLDG++ +  R+ LV+ +   + + F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1304 SAKLRKLDELLVKLKSE-GHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQT-NPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1418          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_MAGGR (Putative DNA helicase INO80 OS=Magnaporthe grisea GN=INO80 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.089e-13
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L  LL  L+     R++L    T+ +DL  +    R + Y RLDG+T    R+  V+ F   +   F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1658 SGKLAKLDELLFKLKAG-GHRVLLYFQMTRMIDLMEEYLTYRNWKYCRLDGSTKFEDRRDTVHDFQT-NPSIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLG 1772          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ATRX_PONPY (Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.423e-13
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 3
Query:  165 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLCRE-------------------RRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA-FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            T  D   +E SGKM +L  +L  + +   D++++ S    +LDL   F +L                      R   Y RLDG+T+   R+K    FND +      F++S+KAG  G+NL+  NR+++FD  WNP+ D Q+  RV+R G
Sbjct: 2007 TDADAEVLEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFG 2155          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ATRX_PANTR (Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.423e-13
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 3
Query:  165 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLCRE-------------------RRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA-FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            T  D   +E SGKM +L  +L  + +   D++++ S    +LDL   F +L                      R   Y RLDG+T+   R+K    FND +      F++S+KAG  G+NL+  NR+++FD  WNP+ D Q+  RV+R G
Sbjct: 2007 TDADAEVLEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFG 2155          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ATRX_HUMAN (Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 1.423e-13
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 3
Query:  165 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLCRE-------------------RRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA-FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            T  D   +E SGKM +L  +L  + +   D++++ S    +LDL   F +L                      R   Y RLDG+T+   R+K    FND +      F++S+KAG  G+NL+  NR+++FD  WNP+ D Q+  RV+R G
Sbjct: 2007 TDADAEVLEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFG 2155          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.427e-13
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  183 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            W E S    +L  L    +  + ++ ++ S +T  LDL     R R + +LR DG  +   R+K++  FN+ +K +   L+S KAGG GLNL   + + L DP WNPA ++QA  R+ R G
Sbjct: 1105 WKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNE-TKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIG 1224          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ATRX_MOUSE (Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.427e-13
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 3
Query:  165 TGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDL---FAQLCRE-------------------RRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA-FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            T  D   +E SGKM +L  +L  + +   D++++ S    +LDL   F +L                      R   Y RLDG+T+   R+K    FND +      F++S+KAG  G+NL+  NR+++FD  WNP+ D Q+  RV+R G
Sbjct: 1990 TDTDAEVLEHSGKMVLLFEIL-RMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDKEKPLIYKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFG 2138          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
INO80_GIBZE4.890e-1437.61Putative DNA helicase INO80 OS=Gibberella zeae GN=... [more]
SWR1_USTMA8.341e-1436.21Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1[more]
INO80_YEAST1.089e-1335.04Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_YEAS71.089e-1335.04Putative DNA helicase INO80 OS=Saccharomyces cerev... [more]
INO80_MAGGR1.089e-1337.61Putative DNA helicase INO80 OS=Magnaporthe grisea ... [more]
ATRX_PONPY1.423e-1332.67Transcriptional regulator ATRX OS=Pongo pygmaeus G... [more]
ATRX_PANTR1.423e-1332.67Transcriptional regulator ATRX OS=Pan troglodytes ... [more]
ATRX_HUMAN1.423e-1332.67Transcriptional regulator ATRX OS=Homo sapiens GN=... [more]
SM3L3_ARATH2.427e-1335.54Putative SWI/SNF-related matrix-associated actin-d... [more]
ATRX_MOUSE2.427e-1332.67Transcriptional regulator ATRX OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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