CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: GTA_NPVAC (Probable global transactivator OS=Autographa californica nuclear polyhedrosis virus GN=GTA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12 Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 3 Query: 192 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSS-KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +S K + L+ + ++D+I+LVS + + L +F +++ L G + R FND + + LL S K GG GLNLIGGN +V+ +P WNP + QA R+ R G Sbjct: 335 MSSKCKRVLDLVDDILNTSNDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNDAANTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMG 453
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: TTF2_HUMAN (Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12 Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 3 Query: 123 FFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 FF E+F G S ++S +LA L R + V+VS +T L + A ++ Y +DG+ + +R LV FN S+ L+S AGG GLNL GGN L L D WNP+ + QA R++R G Sbjct: 978 FFKMELFEGMRES--------TKISS---LLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNH-SRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVG 1106
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12 Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 183 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 WVE S K+ L L LR + + +L S +T LDL + ++RLDGT S +R+K++ F++ L+S KAGG G+NL + + DP WNPA ++QA R+ R G Sbjct: 859 WVE-SSKITALLEELEGLRS-SGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSI-LVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIG 976
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ATRX_DROME (Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12 Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = 3 Query: 186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL----------------------CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA-FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 V S K+ +L RLL + D++++ S Q+LD+ C Y RLDG+ S+ +R+ + FN+ + FL+S++AGG G+NL+ NR+V+FD WNP++D Q+ RV+R G Sbjct: 894 VHHSPKLLILLRLLQQC-EAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFG 1035
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12 Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 3 Query: 210 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +LA L + + V+VS +T L + A ++ R Y +DG+ + +R LV FN S+ L+S AGG GLNL GGN L L D WNP+ + QA R++R G Sbjct: 972 LLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNH-SQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVG 1082
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD5_USTMA (DNA repair protein RAD5 OS=Ustilago maydis GN=RAD5 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.577e-12 Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 3 Query: 261 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA--FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 V+ S +T LDL + R+ +LRLDG+T R KLV F PS FL+S KAGG GLNL N++ L D WN + + QA R+ R G Sbjct: 1231 VIFSQFTSFLDLIEPVLTRYRFHFLRLDGSTPQKVRDKLVLEFQSPSPTNHVVLFLISLKAGGVGLNLTAANKIWLLDFWWNSSIENQAIDRIHRFG 1327
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SM3L1_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 5.977e-12 Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 3 Query: 153 SGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDD-RIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSS-KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S + G D S K+ L LL RQ + + V+ S + + L L + + LRLDG ++ KR +++ F +P LL+S KA G G+NL +R+ LFDP WNPA ++QA R+ R G Sbjct: 692 SSNTDGEDAKSSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIG 824
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD5_CRYNE (DNA repair protein RAD5 OS=Cryptococcus neoformans GN=RAD5 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11 Identity = 44/118 (37.29%), Postives = 59/118 (50.00%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLV-SNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S K+ L R L +RQ LV S +T LDL ++ +LR DGT S ++R + F + + L+S KAGG GLNL N + L D WN A ++QA RV R G Sbjct: 1016 STKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLG 1133
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe GN=SPAC17A2.12 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11 Identity = 40/121 (33.06%), Postives = 67/121 (55.37%), Query Frame = 3 Query: 183 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 W S +L + + +++I++ S ++Q L L + + + ++R DGT S ++RQK ++ FN+ KD L+S KAG GLNL N ++L +P +NP+ + QA RV R G Sbjct: 719 WKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNN-DKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLG 838
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD5_SCHPO (DNA repair protein rad5 OS=Schizosaccharomyces pombe GN=rad8 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11 Identity = 43/113 (38.05%), Postives = 60/113 (53.10%), Query Frame = 3 Query: 222 LLGHLRQRTD----DRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHF-NDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 LLG LRQ T +++V+ S +T LD+ A + + Y R DGT S R + F NDP D ++S KAGG GLNL N + + DP W+ + + QA R+ R G Sbjct: 968 LLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDP--DVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLG 1078 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |