CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: GTA_NPVAC (Probable global transactivator OS=Autographa californica nuclear polyhedrosis virus GN=GTA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 3
Query:  192 LSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSS-KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +S K   +  L+  +   ++D+I+LVS + + L +F    +++    L   G   +  R      FND +  +   LL S K GG GLNLIGGN +V+ +P WNP  + QA  R+ R G
Sbjct:  335 MSSKCKRVLDLVDDILNTSNDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNDAANTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRISRMG 453          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: TTF2_HUMAN (Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 3
Query:  123 FFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            FF  E+F G   S         ++S    +LA L    R     + V+VS +T  L + A   ++    Y  +DG+ +  +R  LV  FN  S+     L+S  AGG GLNL GGN L L D  WNP+ + QA  R++R G
Sbjct:  978 FFKMELFEGMRES--------TKISS---LLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNH-SRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVG 1106          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  183 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            WVE S K+  L   L  LR  +  + +L S +T  LDL         + ++RLDGT S  +R+K++  F++        L+S KAGG G+NL   +   + DP WNPA ++QA  R+ R G
Sbjct:  859 WVE-SSKITALLEELEGLRS-SGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSI-LVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIG 976          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ATRX_DROME (Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQL----------------------CRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA-FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            V  S K+ +L RLL    +   D++++ S   Q+LD+                          C      Y RLDG+ S+ +R+ +   FN+ +      FL+S++AGG G+NL+  NR+V+FD  WNP++D Q+  RV+R G
Sbjct:  894 VHHSPKLLILLRLLQQC-EAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFG 1035          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: TTF2_MOUSE (Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 3
Query:  210 VLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +LA L    +     + V+VS +T  L + A   ++ R  Y  +DG+ +  +R  LV  FN  S+     L+S  AGG GLNL GGN L L D  WNP+ + QA  R++R G
Sbjct:  972 LLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFNH-SQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVG 1082          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD5_USTMA (DNA repair protein RAD5 OS=Ustilago maydis GN=RAD5 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.577e-12
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 3
Query:  261 VLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA--FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            V+ S +T  LDL   +    R+ +LRLDG+T    R KLV  F  PS       FL+S KAGG GLNL   N++ L D  WN + + QA  R+ R G
Sbjct: 1231 VIFSQFTSFLDLIEPVLTRYRFHFLRLDGSTPQKVRDKLVLEFQSPSPTNHVVLFLISLKAGGVGLNLTAANKIWLLDFWWNSSIENQAIDRIHRFG 1327          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SM3L1_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.977e-12
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 3
Query:  153 SGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDD-RIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSS-KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S +  G D      S K+  L  LL   RQ   + + V+ S + + L L     +   +  LRLDG  ++ KR +++  F +P       LL+S KA G G+NL   +R+ LFDP WNPA ++QA  R+ R G
Sbjct:  692 SSNTDGEDAKSSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIG 824          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD5_CRYNE (DNA repair protein RAD5 OS=Cryptococcus neoformans GN=RAD5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 44/118 (37.29%), Postives = 59/118 (50.00%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLV-SNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S K+  L R L  +RQ       LV S +T  LDL      ++   +LR DGT S ++R   +  F   + +    L+S KAGG GLNL   N + L D  WN A ++QA  RV R G
Sbjct: 1016 STKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTWWNEAIEQQAIDRVHRLG 1133          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: YF2C_SCHPO (Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe GN=SPAC17A2.12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 40/121 (33.06%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  183 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            W   S        +L  +  + +++I++ S ++Q L L + + +     ++R DGT S ++RQK ++ FN+  KD    L+S KAG  GLNL   N ++L +P +NP+ + QA  RV R G
Sbjct:  719 WKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNN-DKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLG 838          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RAD5_SCHPO (DNA repair protein rad5 OS=Schizosaccharomyces pombe GN=rad8 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 43/113 (38.05%), Postives = 60/113 (53.10%), Query Frame = 3
Query:  222 LLGHLRQRTD----DRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHF-NDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            LLG LRQ T     +++V+ S +T  LD+ A +    +  Y R DGT S   R   +  F NDP  D    ++S KAGG GLNL   N + + DP W+ + + QA  R+ R G
Sbjct:  968 LLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDP--DVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLG 1078          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GTA_NPVAC1.204e-1233.61Probable global transactivator OS=Autographa calif... [more]
TTF2_HUMAN1.573e-1234.75Transcription termination factor 2 OS=Homo sapiens... [more]
SM3L2_ARATH1.573e-1236.36Putative SWI/SNF-related matrix-associated actin-d... [more]
ATRX_DROME2.054e-1231.47Transcriptional regulator ATRX homolog OS=Drosophi... [more]
TTF2_MOUSE3.504e-1237.50Transcription termination factor 2 OS=Mus musculus... [more]
RAD5_USTMA4.577e-1242.27DNA repair protein RAD5 OS=Ustilago maydis GN=RAD5... [more]
SM3L1_ARATH5.977e-1234.59Putative SWI/SNF-related matrix-associated actin-d... [more]
RAD5_CRYNE1.739e-1137.29DNA repair protein RAD5 OS=Cryptococcus neoformans... [more]
YF2C_SCHPO2.271e-1133.06Uncharacterized ATP-dependent helicase C17A2.12 OS... [more]
RAD5_SCHPO2.271e-1138.05DNA repair protein rad5 OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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