CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22 Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = 3 Query: 186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 + SGK+ +L +LL LR+R +R+++ S + LD+ A+ + R++P+ RLDG+ R++ ++HFN ++F FLLS++AGG G+NL + +V+FD DWNP ND QA AR R G Sbjct: 780 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 898
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22 Identity = 65/174 (37.36%), Postives = 91/174 (52.30%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 + LKK+CNHP + D +S +P TGF D W +SGK +L R+L L R+ RI++ TQ +++ R++ YLRLDG+T R KL+ FNDP+ + FLLS++AGG GLNL + +++FD DWNP D QA R R G Sbjct: 701 VMQLKKICNHPFVFEDVERSIDP--TGFNY--------------------DMLW-RVSGKFELLDRILPKLF-RSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 850
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 1.419e-21 Identity = 64/181 (35.36%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 + ++L L+K CNHP L + + G P TTG VE +GKM +L +LL L+ R D R+++ S T+ LD+ R Y Y R+DG T R + FN P ++F FLLS++AGG G+NL + +VL+D DWNP D QA R R G Sbjct: 492 RKRLLNIAMQLRKCCNHPYL-FQGAEPGPPYTTGEH------------------------LVENAGKMVLLDKLLPKLKDR-DSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIG 646
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.419e-21 Identity = 64/181 (35.36%), Postives = 93/181 (51.38%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 Q +L + LKK NHP L +D ++ + GR G + SGKM +L +LL LR R R+++ S + LD+ R YP+ RLDGT + R+ ++HFN P+ +F FLLS++AGG G+NL+ + +++FD DWNP D QA AR R G Sbjct: 641 QISLLNIVVELKKASNHPYL-FDGVEES------------WMQKINSQGRRDEVLKG---LIMNSGKMVLLDKLLSRLR-RDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIG 804
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.854e-21 Identity = 66/171 (38.60%), Postives = 88/171 (51.46%), Query Frame = 3 Query: 33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+K CNHP L Y F D + F V GK+ +L R+L L QRT R++L S T+ LD+ + + RR Y R+DGTTS+ R+ + FNDP D F FLLS +A G GLNL + +V++DPD NP N++QA AR R G Sbjct: 1281 LRKACNHPLLNYPY----------FNDFSKDF------------------LVRSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIG 1422
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21 Identity = 63/184 (34.24%), Postives = 95/184 (51.63%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGR---SGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 Q +L + LKK CNHP L FP SG++ GG A ++ SGK+ +L ++L L+++ R+++ S T+ LDL Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + +++FD DWNP ND QA +R R G Sbjct: 1015 QVSLLNIMMDLKKCCNHPYL---------------------FPVAAMESPKLPSGAYEGG--ALIKSSGKLMLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1174
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.162e-21 Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGK VL +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R L++ FN D F FLLS+KAGG G+NL N ++L D D NP NDKQA R R G Sbjct: 853 SGKFRVLGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG 967
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_BOMMO (Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21 Identity = 60/175 (34.29%), Postives = 90/175 (51.43%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGD-GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 + LKK CNH L PE F R+ T + SGK+ +L +LL L++ T R+++ S + LD+ A+ + R +P+ RLDG+ R++ ++HFN +F FLLS++AGG G+NL + +++FD DWNP ND QA AR R G Sbjct: 476 VIELKKCCNHALLT---------------------KPEDFESRASLATSDAVEKLLRGSGKLLLLDKLLCRLKE-TGHRVLIFSQMVRMLDILAEYLQRRHFPFQRLDGSIKGELRKQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIG 628
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD7_MOUSE (Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21 Identity = 61/178 (34.27%), Postives = 92/178 (51.69%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L + L+K CNHP LI G E+ I E + S + A ++ +GK+ ++ +LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 1231 LLNTMMELRKCCNHPYLI-----------NGAEEKILEEFKETHNAESPDFQLQ--AMIQAAGKLVLIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1394
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD7_HUMAN (Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7 PE=1 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21 Identity = 61/178 (34.27%), Postives = 92/178 (51.69%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L + L+K CNHP LI G E+ I E + S + A ++ +GK+ ++ +LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 1241 LLNTMMELRKCCNHPYLI-----------NGAEEKILEEFKETHNAESPDFQLQ--AMIQAAGKLVLIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1404 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |