CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22
Identity = 50/120 (41.67%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +  SGK+ +L +LL  LR+R  +R+++ S   + LD+ A+  + R++P+ RLDG+     R++ ++HFN    ++F FLLS++AGG G+NL   + +V+FD DWNP ND QA AR  R G
Sbjct:  780 IRSSGKLILLDKLLIRLRER-GNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 898          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 65/174 (37.36%), Postives = 91/174 (52.30%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +  LKK+CNHP +  D  +S +P  TGF                      D  W  +SGK  +L R+L  L  R+  RI++    TQ +++       R++ YLRLDG+T    R KL+  FNDP+ +   FLLS++AGG GLNL   + +++FD DWNP  D QA  R  R G
Sbjct:  701 VMQLKKICNHPFVFEDVERSIDP--TGFNY--------------------DMLW-RVSGKFELLDRILPKLF-RSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 850          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.419e-21
Identity = 64/181 (35.36%), Postives = 89/181 (49.17%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            + ++L     L+K CNHP L +   + G P TTG                           VE +GKM +L +LL  L+ R D R+++ S  T+ LD+       R Y Y R+DG T    R   +  FN P  ++F FLLS++AGG G+NL   + +VL+D DWNP  D QA  R  R G
Sbjct:  492 RKRLLNIAMQLRKCCNHPYL-FQGAEPGPPYTTGEH------------------------LVENAGKMVLLDKLLPKLKDR-DSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRIG 646          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HRP3_SCHPO (Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe GN=hrp3 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.419e-21
Identity = 64/181 (35.36%), Postives = 93/181 (51.38%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            Q  +L  +  LKK  NHP L +D ++              +       GR      G    +  SGKM +L +LL  LR R   R+++ S   + LD+       R YP+ RLDGT   + R+  ++HFN P+  +F FLLS++AGG G+NL+  + +++FD DWNP  D QA AR  R G
Sbjct:  641 QISLLNIVVELKKASNHPYL-FDGVEES------------WMQKINSQGRRDEVLKG---LIMNSGKMVLLDKLLSRLR-RDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIG 804          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.854e-21
Identity = 66/171 (38.60%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+K CNHP L Y            F D  + F                   V   GK+ +L R+L  L QRT  R++L S  T+ LD+  +  + RR  Y R+DGTTS+  R+  +  FNDP  D F FLLS +A G GLNL   + +V++DPD NP N++QA AR  R G
Sbjct: 1281 LRKACNHPLLNYPY----------FNDFSKDF------------------LVRSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIG 1422          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 63/184 (34.24%), Postives = 95/184 (51.63%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGR---SGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            Q  +L  +  LKK CNHP L                     FP          SG++ GG  A ++ SGK+ +L ++L  L+++   R+++ S  T+ LDL         Y Y R+DG  + + RQ+ ++ FN P   +F FLLS++AGG G+NL   + +++FD DWNP ND QA +R  R G
Sbjct: 1015 QVSLLNIMMDLKKCCNHPYL---------------------FPVAAMESPKLPSGAYEGG--ALIKSSGKLMLLQKMLRKLKEQ-GHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1174          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.162e-21
Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK  VL  +L  L+Q+  DR+VL S +T  LD+   L +  ++ YLRLDG T IS+R  L++ FN    D F FLLS+KAGG G+NL   N ++L D D NP NDKQA  R  R G
Sbjct:  853 SGKFRVLGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG 967          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_BOMMO (Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21
Identity = 60/175 (34.29%), Postives = 90/175 (51.43%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGD-GAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +  LKK CNH  L                       PE F  R+   T       +  SGK+ +L +LL  L++ T  R+++ S   + LD+ A+  + R +P+ RLDG+     R++ ++HFN     +F FLLS++AGG G+NL   + +++FD DWNP ND QA AR  R G
Sbjct:  476 VIELKKCCNHALLT---------------------KPEDFESRASLATSDAVEKLLRGSGKLLLLDKLLCRLKE-TGHRVLIFSQMVRMLDILAEYLQRRHFPFQRLDGSIKGELRKQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIG 628          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD7_MOUSE (Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21
Identity = 61/178 (34.27%), Postives = 92/178 (51.69%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  +  L+K CNHP LI            G E+ I     E  +  S  +     A ++ +GK+ ++ +LL  L+     R+++ S   + LD+      +RRYPY R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct: 1231 LLNTMMELRKCCNHPYLI-----------NGAEEKILEEFKETHNAESPDFQLQ--AMIQAAGKLVLIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1394          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD7_HUMAN (Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21
Identity = 61/178 (34.27%), Postives = 92/178 (51.69%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  +  L+K CNHP LI            G E+ I     E  +  S  +     A ++ +GK+ ++ +LL  L+     R+++ S   + LD+      +RRYPY R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct: 1241 LLNTMMELRKCCNHPYLI-----------NGAEEKILEEFKETHNAESPDFQLQ--AMIQAAGKLVLIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1404          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CHD1_CHICK6.372e-2241.67Chromodomain-helicase-DNA-binding protein 1 OS=Gal... [more]
SNF21_SCHPO8.322e-2237.36Chromatin structure-remodeling complex subunit snf... [more]
ISW2_ORYSJ1.419e-2135.36Probable chromatin-remodeling complex ATPase chain... [more]
HRP3_SCHPO1.419e-2135.36Chromodomain helicase hrp3 OS=Schizosaccharomyces ... [more]
BRM_ARATH1.854e-2138.60ATP-dependent helicase BRM OS=Arabidopsis thaliana... [more]
CHD3_HUMAN2.421e-2134.24Chromodomain-helicase-DNA-binding protein 3 OS=Hom... [more]
SMRCD_HUMAN3.162e-2148.72SWI/SNF-related matrix-associated actin-dependent ... [more]
CHD1_BOMMO5.394e-2134.29Chromodomain-helicase-DNA-binding protein 1 OS=Bom... [more]
CHD7_MOUSE7.045e-2134.27Chromodomain-helicase-DNA-binding protein 7 OS=Mus... [more]
CHD7_HUMAN7.045e-2134.27Chromodomain-helicase-DNA-binding protein 7 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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