CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21
Identity = 56/117 (47.86%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK   L  +L  L+Q+  DR+VL S +T  LD+   L +  ++ YLRLDG T IS+R  L++ FN    D F FLLS+KAGG G+NL   N ++L D D NP NDKQA  R  R G
Sbjct:  848 SGKFRALGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG 962          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL---SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            I  L+K+CNHP +                        E FS   G +TGG    ++L   SGK  +L R+L  LR  T+ +++L    T  + +       R + YLRLDGTT    R  L+  FN+P  + F FLLS++AGG GLNL   + +++FD DWNP  D QA  R  R G
Sbjct: 1039 IMQLRKICNHPYMFQHI-------------------EESFSEHLG-FTGGIVQGLDLYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL---SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            I  L+K+CNHP +                        E FS   G +TGG    ++L   SGK  +L R+L  LR  T+ +++L    T  + +       R + YLRLDGTT    R  L+  FN+P  + F FLLS++AGG GLNL   + +++FD DWNP  D QA  R  R G
Sbjct: 1039 IMQLRKICNHPYMFQHI-------------------EESFSEHLG-FTGGIVQGLDLYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL---SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            I  L+K+CNHP +                        E FS   G +TGG    ++L   SGK  +L R+L  LR  T+ +++L    T  + +       R + YLRLDGTT    R  L+  FN+P  + F FLLS++AGG GLNL   + +++FD DWNP  D QA  R  R G
Sbjct: 1039 IMQLRKICNHPYMFQHI-------------------EESFSEHLG-FTGGIVQGLDLYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL---SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            I  L+K+CNHP +                        E FS   G +TGG    ++L   SGK  +L R+L  LR  T+ +++L    T  + +       R + YLRLDGTT    R  L+  FN+P  + F FLLS++AGG GLNL   + +++FD DWNP  D QA  R  R G
Sbjct: 1031 IMQLRKICNHPYMFQHI-------------------EESFSEHLG-FTGGIVQGLDLYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1186          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 65/178 (36.52%), Postives = 94/178 (52.81%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            LA +T LKKLC+HP+L+         G     D       E  S  S      D   +E SGK+  +  L+  LR+    R ++ S   + LD+  ++ R R +  LRLDGT T +++R+K ++ F    K    FLL+++ GG G+ L G NR+V+FDP WNPA D QA  R +R G
Sbjct:  415 LAELTVLKKLCDHPRLLSQRAVI-QLGLERGSDSELVHSDESESAVSQIDNISDHTLIEESGKLQFVVSLMECLREE-GHRTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQT-DKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIG 589          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            Q  +L  +  LKK CNHP L                      P  M+ G          A +  SGK+ +L ++L +L++    R+++ S  T+ LDL         Y Y R+DG  + + RQ+ ++ FN P   +F FLLS++AGG G+NL   + ++++D DWNP ND QA +R  R G
Sbjct:  998 QVSLLNVVMDLKKCCNHPYLFPVAAMEAPK-----------MPNGMYDG---------SALIRASGKLLLLQKMLKNLKEG-GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1157          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            Q  +L  +  LKK CNHP L                      P  M+ G          A +  SGK+ +L ++L +L++    R+++ S  T+ LDL         Y Y R+DG  + + RQ+ ++ FN P   +F FLLS++AGG G+NL   + ++++D DWNP ND QA +R  R G
Sbjct: 1005 QVSLLNVVMDLKKCCNHPYLFPVAAMEAPK-----------MPNGMYDG---------SALIRASGKLLLLQKMLKNLKEG-GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1164          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  +  L+K CNHP L     +      +G  +                      +  + SGK+ +L+++L  L+   + R++L S  T+ L++         Y Y R+DG+     RQK ++ FNDP  + F FLLS++AGG G+NL   + +++FD DWNP ND QA +R  R G
Sbjct:  544 LLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEM--------------------SSLTKASGKLDLLSKMLKQLKA-DNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMG 700          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 48/117 (41.03%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+ +L +LL  L++ T  R+++ S   + LD+ A   ++R +P+ RLDG+     R++ ++HFN     +F FLLS++AGG G+NL   + +++FD DWNP ND QA AR  R G
Sbjct:  835 SGKLVLLDKLLCRLKE-TGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIG 950          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
SMRCD_MOUSE9.200e-2147.86SWI/SNF-related matrix-associated actin-dependent ... [more]
SMCA4_RAT1.202e-2036.16Transcription activator BRG1 OS=Rattus norvegicus ... [more]
SMCA4_MOUSE1.202e-2036.16Transcription activator BRG1 OS=Mus musculus GN=Sm... [more]
SMCA4_HUMAN1.202e-2036.16Transcription activator BRG1 OS=Homo sapiens GN=SM... [more]
SMCA4_BOVIN1.202e-2036.16Transcription activator BRG1 OS=Bos taurus GN=SMAR... [more]
ERC6L_DANRE1.202e-2036.52DNA excision repair protein ERCC-6-like OS=Danio r... [more]
CHD4_MOUSE1.202e-2032.60Chromodomain-helicase-DNA-binding protein 4 OS=Mus... [more]
CHD4_HUMAN1.202e-2032.60Chromodomain-helicase-DNA-binding protein 4 OS=Hom... [more]
CHD3_DROME1.202e-2031.46Chromodomain-helicase-DNA-binding protein 3 OS=Dro... [more]
CHD1_DROME1.202e-2041.03Chromodomain-helicase-DNA-binding protein 1 OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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