CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21 Identity = 56/117 (47.86%), Postives = 72/117 (61.54%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGK L +L L+Q+ DR+VL S +T LD+ L + ++ YLRLDG T IS+R L++ FN D F FLLS+KAGG G+NL N ++L D D NP NDKQA R R G Sbjct: 848 SGKFRALGCILSELKQK-GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG 962
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA4_RAT (Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL---SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 I L+K+CNHP + E FS G +TGG ++L SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R L+ FN+P + F FLLS++AGG GLNL + +++FD DWNP D QA R R G Sbjct: 1039 IMQLRKICNHPYMFQHI-------------------EESFSEHLG-FTGGIVQGLDLYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA4_MOUSE (Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL---SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 I L+K+CNHP + E FS G +TGG ++L SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R L+ FN+P + F FLLS++AGG GLNL + +++FD DWNP D QA R R G Sbjct: 1039 IMQLRKICNHPYMFQHI-------------------EESFSEHLG-FTGGIVQGLDLYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA4_HUMAN (Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL---SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 I L+K+CNHP + E FS G +TGG ++L SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R L+ FN+P + F FLLS++AGG GLNL + +++FD DWNP D QA R R G Sbjct: 1039 IMQLRKICNHPYMFQHI-------------------EESFSEHLG-FTGGIVQGLDLYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA4_BOVIN (Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 64/177 (36.16%), Postives = 88/177 (49.72%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVEL---SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 I L+K+CNHP + E FS G +TGG ++L SGK +L R+L LR T+ +++L T + + R + YLRLDGTT R L+ FN+P + F FLLS++AGG GLNL + +++FD DWNP D QA R R G Sbjct: 1031 IMQLRKICNHPYMFQHI-------------------EESFSEHLG-FTGGIVQGLDLYRASGKFELLDRILPKLRA-TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1186
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 65/178 (36.52%), Postives = 94/178 (52.81%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 LA +T LKKLC+HP+L+ G D E S S D +E SGK+ + L+ LR+ R ++ S + LD+ ++ R R + LRLDGT T +++R+K ++ F K FLL+++ GG G+ L G NR+V+FDP WNPA D QA R +R G Sbjct: 415 LAELTVLKKLCDHPRLLSQRAVI-QLGLERGSDSELVHSDESESAVSQIDNISDHTLIEESGKLQFVVSLMECLREE-GHRTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQT-DKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIG 589
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 Q +L + LKK CNHP L P M+ G A + SGK+ +L ++L +L++ R+++ S T+ LDL Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R G Sbjct: 998 QVSLLNVVMDLKKCCNHPYLFPVAAMEAPK-----------MPNGMYDG---------SALIRASGKLLLLQKMLKNLKEG-GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1157
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 Q +L + LKK CNHP L P M+ G A + SGK+ +L ++L +L++ R+++ S T+ LDL Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R G Sbjct: 1005 QVSLLNVVMDLKKCCNHPYLFPVAAMEAPK-----------MPNGMYDG---------SALIRASGKLLLLQKMLKNLKEG-GHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1164
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L + L+K CNHP L + +G + + + SGK+ +L+++L L+ + R++L S T+ L++ Y Y R+DG+ RQK ++ FNDP + F FLLS++AGG G+NL + +++FD DWNP ND QA +R R G Sbjct: 544 LLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEM--------------------SSLTKASGKLDLLSKMLKQLKA-DNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMG 700
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 48/117 (41.03%), Postives = 75/117 (64.10%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGK+ +L +LL L++ T R+++ S + LD+ A ++R +P+ RLDG+ R++ ++HFN +F FLLS++AGG G+NL + +++FD DWNP ND QA AR R G Sbjct: 835 SGKLVLLDKLLCRLKE-TGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIG 950 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |