CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20 Identity = 62/181 (34.25%), Postives = 92/181 (50.83%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 + ++L L+K CNHP L + PG PP +T GD + +GKM +L +LL L++R D R+++ S T+ LD+ R Y Y R+DG T +R + +N P ++F FLLS++AGG G+NL + ++L+D DWNP D QA R R G Sbjct: 450 RKRLLNIAMQLRKCCNHPYLF----QGAEPG-----------PP---------YTTGDHL-ITNAGKMVLLDKLLPKLKER-DSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIG 604
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20 Identity = 59/181 (32.60%), Postives = 93/181 (51.38%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 ++++L + L+K CNHP L +D + G P TT D V + K+ VL +LL L++ R+++ S ++ LD+ C R Y Y R+DG+T+ R + ++ +N P +F FLL+++AGG G+NL + +VL+D DWNP D QA R R G Sbjct: 462 KTRLLNIMMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DEHLVYNAAKLQVLDKLLKKLKEE-GSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIG 616
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD7_CHICK (Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20 Identity = 61/178 (34.27%), Postives = 92/178 (51.69%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L + L+K CNHP LI G E+ I E + S + A ++ +GK+ ++ +LL L+ R+++ S + LD+ +RRYPY R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 1242 LLNTMMELRKCCNHPYLI-----------NGAEEKILEEFKETHNADSPDFQLQ--AMIQAAGKLVLIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1405
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20 Identity = 63/174 (36.21%), Postives = 89/174 (51.15%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 I L+KLCNHP ++ I+ TG + P+++ +SGK +L R+L L+ T+ R++L TQ + + R++ YLRLDGTT R +L+ FN D F FLLS++AGG GLNL + +V+FD DWNP D QA R R G Sbjct: 1058 IVQLRKLCNHP-FMFQHIEEKYCDHTGGHGVVS--GPDLY---------------RVSGKFELLDRILPKLKA-TNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIG 1212
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RDH54_SCHPO (Meiotic recombination protein rdh54 OS=Schizosaccharomyces pombe GN=rdh54 PE=1 SV=3) HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20 Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA-FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S K+ +LA LL QR + V+VS Y +TL+L + +L G+T S+R +V++FN S EF+ LLSSKAGGCGLNL G RL++++P WNPA D QA +R++R G Sbjct: 531 SSKLQILAALLKSF-QRGCQKAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSG 647
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20 Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 I L+K+CNHP ++D ++ + G D + ++GK +L R+L + + R+++ TQ +D+ R + Y+RLDG+T +R +++N FN P D F FLLS++AGG GLNL + +++FD DWNP D QA R R G Sbjct: 756 IMQLRKICNHP-FVFDEVEGVVNPSRGNSDLL----------------------FRVAGKFELLDRVLPKFKA-SGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIG 905
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20 Identity = 62/174 (35.63%), Postives = 85/174 (48.85%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 + LKK+CNHP + FED R P S T D W +GK +L R+L L T + ++ TQ + + R + + YLRLDG+T R L+ FNDP D + F+LS++AGG GLNL + +++FD DWNP D QA R R G Sbjct: 1152 VMQLKKICNHPFI--------------FEDVERAIDP--------SGTNVDLLW-RAAGKFELLDRILPKLFL-TGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIG 1301
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20 Identity = 64/191 (33.51%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ------------KLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 ++L + L+K CNHP L +D + G P TT D V SGKM VL +LL L+++ R+++ S T+ LD+ C R Y Y RLDG T +R+ + + FN P+ +F F+LS++AGG G+NL + ++L+D DWNP D QA R R G Sbjct: 448 RLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DEHIVSNSGKMVVLDKLLAKLKEQ-GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 612
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20 Identity = 58/181 (32.04%), Postives = 93/181 (51.38%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +++++ + L+K NHP L +D + G P TT D V+ SGKM VL +LL +++ R+++ S +++ LDL C R Y Y RLDG+T R + +N P +F F+L+++AGG G+NL + ++++D DWNP +D QA R R G Sbjct: 395 KARLMNILMHLRKCVNHPYL-FDGAEPGPPFTT------------------------DQHLVDNSGKMVVLDKLLMKFKEQ-GSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIG 549
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_XENTR (Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis GN=chd8 PE=2 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20 Identity = 60/178 (33.71%), Postives = 89/178 (50.00%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L + L+K CNHP LI + + F + PP+ A V SGK+ ++ +LL LR ++++ S + LD+ +RRY Y R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 1028 LLNTMMELRKCCNHPYLITGAEEKI---ISEFREATPVVPPDFHVQ----------AMVRSSGKLVLIDKLLPKLRAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1191 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |