CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 62/181 (34.25%), Postives = 92/181 (50.83%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            + ++L     L+K CNHP L     +   PG           PP         +T GD   +  +GKM +L +LL  L++R D R+++ S  T+ LD+       R Y Y R+DG T   +R   +  +N P  ++F FLLS++AGG G+NL   + ++L+D DWNP  D QA  R  R G
Sbjct:  450 RKRLLNIAMQLRKCCNHPYLF----QGAEPG-----------PP---------YTTGDHL-ITNAGKMVLLDKLLPKLKER-DSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIG 604          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW1_YEAST (ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces cerevisiae GN=ISW1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 59/181 (32.60%), Postives = 93/181 (51.38%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            ++++L  +  L+K CNHP L +D  + G P TT                        D   V  + K+ VL +LL  L++    R+++ S  ++ LD+    C  R Y Y R+DG+T+   R + ++ +N P   +F FLL+++AGG G+NL   + +VL+D DWNP  D QA  R  R G
Sbjct:  462 KTRLLNIMMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DEHLVYNAAKLQVLDKLLKKLKEE-GSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIG 616          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD7_CHICK (Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 61/178 (34.27%), Postives = 92/178 (51.69%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  +  L+K CNHP LI            G E+ I     E  +  S  +     A ++ +GK+ ++ +LL  L+     R+++ S   + LD+      +RRYPY R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct: 1242 LLNTMMELRKCCNHPYLI-----------NGAEEKILEEFKETHNADSPDFQLQ--AMIQAAGKLVLIDKLLPKLKAG-GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1405          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 63/174 (36.21%), Postives = 89/174 (51.15%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            I  L+KLCNHP  ++  I+      TG    +    P+++                +SGK  +L R+L  L+  T+ R++L    TQ + +       R++ YLRLDGTT    R +L+  FN    D F FLLS++AGG GLNL   + +V+FD DWNP  D QA  R  R G
Sbjct: 1058 IVQLRKLCNHP-FMFQHIEEKYCDHTGGHGVVS--GPDLY---------------RVSGKFELLDRILPKLKA-TNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIG 1212          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RDH54_SCHPO (Meiotic recombination protein rdh54 OS=Schizosaccharomyces pombe GN=rdh54 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFA-FLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S K+ +LA LL    QR   + V+VS Y +TL+L           + +L G+T  S+R  +V++FN  S  EF+  LLSSKAGGCGLNL G  RL++++P WNPA D QA +R++R G
Sbjct:  531 SSKLQILAALLKSF-QRGCQKAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSG 647          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            I  L+K+CNHP  ++D ++     + G  D +                        ++GK  +L R+L   +  +  R+++    TQ +D+     R +   Y+RLDG+T   +R +++N FN P  D F FLLS++AGG GLNL   + +++FD DWNP  D QA  R  R G
Sbjct:  756 IMQLRKICNHP-FVFDEVEGVVNPSRGNSDLL----------------------FRVAGKFELLDRVLPKFKA-SGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIG 905          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SNF22_SCHPO (SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe GN=snf22 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 62/174 (35.63%), Postives = 85/174 (48.85%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +  LKK+CNHP +              FED  R   P        S T  D  W   +GK  +L R+L  L   T  + ++    TQ + +     R + + YLRLDG+T    R  L+  FNDP  D + F+LS++AGG GLNL   + +++FD DWNP  D QA  R  R G
Sbjct: 1152 VMQLKKICNHPFI--------------FEDVERAIDP--------SGTNVDLLW-RAAGKFELLDRILPKLFL-TGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIG 1301          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 64/191 (33.51%), Postives = 93/191 (48.69%), Query Frame = 3
Query:    9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQ------------KLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            ++L  +  L+K CNHP L +D  + G P TT                        D   V  SGKM VL +LL  L+++   R+++ S  T+ LD+    C  R Y Y RLDG T   +R+            + +  FN P+  +F F+LS++AGG G+NL   + ++L+D DWNP  D QA  R  R G
Sbjct:  448 RLLNILMQLRKCCNHPYL-FDGAEPGPPYTT------------------------DEHIVSNSGKMVVLDKLLAKLKEQ-GSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 612          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 58/181 (32.04%), Postives = 93/181 (51.38%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +++++  +  L+K  NHP L +D  + G P TT                        D   V+ SGKM VL +LL   +++   R+++ S +++ LDL    C  R Y Y RLDG+T    R   +  +N P   +F F+L+++AGG G+NL   + ++++D DWNP +D QA  R  R G
Sbjct:  395 KARLMNILMHLRKCVNHPYL-FDGAEPGPPFTT------------------------DQHLVDNSGKMVVLDKLLMKFKEQ-GSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIG 549          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_XENTR (Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis GN=chd8 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 60/178 (33.71%), Postives = 89/178 (50.00%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  +  L+K CNHP LI    +      + F +     PP+              A V  SGK+ ++ +LL  LR     ++++ S   + LD+      +RRY Y R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct: 1028 LLNTMMELRKCCNHPYLITGAEEKI---ISEFREATPVVPPDFHVQ----------AMVRSSGKLVLIDKLLPKLRAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1191          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
ISW2_ARATH1.569e-2034.25Putative chromatin-remodeling complex ATPase chain... [more]
ISW1_YEAST1.569e-2032.60ISWI chromatin-remodeling complex ATPase ISW1 OS=S... [more]
CHD7_CHICK1.569e-2034.27Chromodomain-helicase-DNA-binding protein 7 OS=Gal... [more]
BRM_DROME1.569e-2036.21ATP-dependent helicase brm OS=Drosophila melanogas... [more]
RDH54_SCHPO2.050e-2044.92Meiotic recombination protein rdh54 OS=Schizosacch... [more]
STH1_YEAST2.677e-2032.18Nuclear protein STH1/NPS1 OS=Saccharomyces cerevis... [more]
SNF22_SCHPO2.677e-2035.63SWI/SNF chromatin-remodeling complex subunit snf22... [more]
SMCA1_HUMAN2.677e-2033.51Probable global transcription activator SNF2L1 OS=... [more]
ISW1_CAEEL2.677e-2032.04Chromatin-remodeling complex ATPase chain isw-1 OS... [more]
CHD8_XENTR2.677e-2033.71Chromodomain-helicase-DNA-binding protein 8 OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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