CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20 Identity = 58/181 (32.04%), Postives = 95/181 (52.49%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 Q ++ I LKK CNHP L + C+ P++ ++G + G A ++ +GK +L ++L L+ R+++ S T LD+ C Y Y R+DG+ + +RQ ++ +N P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R G Sbjct: 895 QMSLINIIMELKKCCNHPYLF-------------MKACLE--APKL---KNGMYEGS--ALIKNAGKFVLLQKMLRKLKDG-GHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLG 1054
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20 Identity = 62/184 (33.70%), Postives = 91/184 (49.46%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGR---SGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 Q +L + LKK CNHP L FP +GS+ G + V+ SGK+ +L ++L LR R+++ S T+ LDL Y Y R+DG + RQ+ ++ FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R G Sbjct: 979 QVSLLNIMMDLKKCCNHPYL---------------------FPVAAVEAPVLPNGSYDGS--SLVKSSGKLMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1138
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20 Identity = 63/174 (36.21%), Postives = 84/174 (48.28%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 I L+K+CNHP + F+ F + G S G + SGK +L R+L LR T+ R++L T + + R + YLRLDGTT R L+ FN+P F FLLS++AGG GLNL + +V+FD DWNP D QA R R G Sbjct: 1014 IMQLRKICNHPYM--------------FQHIEESFAEHL--GYSNGVINGAELY-RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIG 1169
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20 Identity = 63/174 (36.21%), Postives = 84/174 (48.28%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 I L+K+CNHP + F+ F + G S G + SGK +L R+L LR T+ R++L T + + R + YLRLDGTT R L+ FN+P F FLLS++AGG GLNL + +V+FD DWNP D QA R R G Sbjct: 1009 IMQLRKICNHPYM--------------FQHIEESFAEHL--GYSNGVINGAELY-RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIG 1164
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19 Identity = 62/181 (34.25%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 Q +L + LKK+ NHP L PG + GR + + SGKM +L +LL L+ R+++ S + L++ + R Y Y RLDGT S R+ ++HFN P +F FLLS++AGG G+NL + +++FD DWNP D QA AR R G Sbjct: 657 QLSLLNIVVELKKVSNHPYLF--------PGAA----------EKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLK-HDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIG 818
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ARIP4_XENTR (Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19 Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP------------------YLRLDGTTSISKRQKLVNHFNDPSKDE-FAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S KM +L L+ R D+I++ S TL + + +R+ P Y RLDG+TS S+R++L+N FNDPS ++ + FLLS++AG G+NLIG NR+V+FD WNP +D QA RV+R G Sbjct: 715 SPKMVLLFHLIEE-SMRMGDKILVFSQSLSTLSIMEEFLAKRKMPIPAGSDGQEGHTWIRNVNYYRLDGSTSASERERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG 849
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19 Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 3 Query: 33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 LKK CNHP L + G + + + +GK+ +L+++L L+ + + R+++ S T+ LD+ +Y Y R+DG + + RQ+ ++ FN P +F FLLS++AGG G+NL + ++++D DWNP ND QA +R R G Sbjct: 1017 LKKCCNHPYLFPSAAEEATTAAGGLYEI--------------------NSLTKAAGKLVLLSKMLKQLKAQ-NHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1166
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_HUMAN (Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8 PE=1 SV=4) HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19 Identity = 58/178 (32.58%), Postives = 88/178 (49.44%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L + L+K CNHP LI + T F + P + A V +GK+ ++ +LL L+ ++++ S + LD+ +RRY Y R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 1084 LLNTMMELRKCCNHPYLINGAEEKI---LTEFREACHIIPHDFHLQ----------AMVRSAGKLVLIDKLLPKLKAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1247
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19 Identity = 69/187 (36.90%), Postives = 94/187 (50.27%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSG-NPGTTGFEDCIRFFPPEMFSGRSGSWTGG--------DGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 LA + LKKLC+HP+L+ N GT +D G G + D +E SGKM L LL LR +V S Q L++ +L + R + LR+DGT T + +R+K +N F +KD FLL+++ GG GL L R+V+FDP WNPA D QA RV+R G Sbjct: 401 LAELGVLKKLCDHPRLLSARACCLLNLGTFSAQD-----------GNEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVF-SQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIG 574
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19 Identity = 58/174 (33.33%), Postives = 83/174 (47.70%), Query Frame = 3 Query: 24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 I LKK+CNHP + + NP +D R ++GK +L R+L L+ T R+++ TQ +D+ R YLRLDG T +R +L+ FN P + F+LS++AGG GLNL + +++FD DWNP D QA R R G Sbjct: 1052 IMQLKKICNHPFVFEEVEDQINPTRETNDDIWR-----------------------VAGKFELLDRILPKLKA-TGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIG 1201 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |