CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 58/181 (32.04%), Postives = 95/181 (52.49%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            Q  ++  I  LKK CNHP L               + C+    P++   ++G + G   A ++ +GK  +L ++L  L+     R+++ S  T  LD+    C    Y Y R+DG+ +  +RQ  ++ +N P   +F FLLS++AGG G+NL   + ++++D DWNP ND QA +R  R G
Sbjct:  895 QMSLINIIMELKKCCNHPYLF-------------MKACLE--APKL---KNGMYEGS--ALIKNAGKFVLLQKMLRKLKDG-GHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLG 1054          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 62/184 (33.70%), Postives = 91/184 (49.46%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGR---SGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            Q  +L  +  LKK CNHP L                     FP          +GS+ G   + V+ SGK+ +L ++L  LR     R+++ S  T+ LDL         Y Y R+DG  +   RQ+ ++ FN P   +F FLLS++AGG G+NL   + ++++D DWNP ND QA +R  R G
Sbjct:  979 QVSLLNIMMDLKKCCNHPYL---------------------FPVAAVEAPVLPNGSYDGS--SLVKSSGKLMLLQKMLKKLRDE-GHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1138          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA2_MOUSE (Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 63/174 (36.21%), Postives = 84/174 (48.28%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            I  L+K+CNHP +              F+     F   +  G S     G   +   SGK  +L R+L  LR  T+ R++L    T  + +       R + YLRLDGTT    R  L+  FN+P    F FLLS++AGG GLNL   + +V+FD DWNP  D QA  R  R G
Sbjct: 1014 IMQLRKICNHPYM--------------FQHIEESFAEHL--GYSNGVINGAELY-RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIG 1169          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SMCA2_HUMAN (Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 63/174 (36.21%), Postives = 84/174 (48.28%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            I  L+K+CNHP +              F+     F   +  G S     G   +   SGK  +L R+L  LR  T+ R++L    T  + +       R + YLRLDGTT    R  L+  FN+P    F FLLS++AGG GLNL   + +V+FD DWNP  D QA  R  R G
Sbjct: 1009 IMQLRKICNHPYM--------------FQHIEESFAEHL--GYSNGVINGAELY-RASGKFELLDRILPKLRA-TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIG 1164          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HRP1_SCHPO (Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe GN=hrp1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 62/181 (34.25%), Postives = 89/181 (49.17%), Query Frame = 3
Query:    3 QSKILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            Q  +L  +  LKK+ NHP L         PG             +   GR  +        +  SGKM +L +LL  L+     R+++ S   + L++  +    R Y Y RLDGT   S R+  ++HFN P   +F FLLS++AGG G+NL   + +++FD DWNP  D QA AR  R G
Sbjct:  657 QLSLLNIVVELKKVSNHPYLF--------PGAA----------EKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLK-HDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIG 818          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ARIP4_XENTR (Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP------------------YLRLDGTTSISKRQKLVNHFNDPSKDE-FAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S KM +L  L+     R  D+I++ S    TL +  +   +R+ P                  Y RLDG+TS S+R++L+N FNDPS ++ + FLLS++AG  G+NLIG NR+V+FD  WNP +D QA  RV+R G
Sbjct:  715 SPKMVLLFHLIEE-SMRMGDKILVFSQSLSTLSIMEEFLAKRKMPIPAGSDGQEGHTWIRNVNYYRLDGSTSASERERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG 849          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 3
Query:   33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            LKK CNHP L     +       G  +                      +  + +GK+ +L+++L  L+ + + R+++ S  T+ LD+        +Y Y R+DG  + + RQ+ ++ FN P   +F FLLS++AGG G+NL   + ++++D DWNP ND QA +R  R G
Sbjct: 1017 LKKCCNHPYLFPSAAEEATTAAGGLYEI--------------------NSLTKAAGKLVLLSKMLKQLKAQ-NHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1166          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_HUMAN (Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8 PE=1 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 58/178 (32.58%), Postives = 88/178 (49.44%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  +  L+K CNHP LI    +      T F +     P +              A V  +GK+ ++ +LL  L+     ++++ S   + LD+      +RRY Y R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct: 1084 LLNTMMELRKCCNHPYLINGAEEKI---LTEFREACHIIPHDFHLQ----------AMVRSAGKLVLIDKLLPKLKAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1247          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 69/187 (36.90%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSG-NPGTTGFEDCIRFFPPEMFSGRSGSWTGG--------DGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            LA +  LKKLC+HP+L+        N GT   +D           G  G  +          D   +E SGKM  L  LL  LR      +V  S   Q L++  +L + R +  LR+DGT T + +R+K +N F   +KD   FLL+++ GG GL L    R+V+FDP WNPA D QA  RV+R G
Sbjct:  401 LAELGVLKKLCDHPRLLSARACCLLNLGTFSAQD-----------GNEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVF-SQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIG 574          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SNF2_YEAST (Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae GN=SNF2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 58/174 (33.33%), Postives = 83/174 (47.70%), Query Frame = 3
Query:   24 ITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            I  LKK+CNHP +  +     NP     +D  R                       ++GK  +L R+L  L+  T  R+++    TQ +D+     R     YLRLDG T   +R +L+  FN P  +   F+LS++AGG GLNL   + +++FD DWNP  D QA  R  R G
Sbjct: 1052 IMQLKKICNHPFVFEEVEDQINPTRETNDDIWR-----------------------VAGKFELLDRILPKLKA-TGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIG 1201          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CHD3_CAEEL2.677e-2032.04Chromodomain-helicase-DNA-binding protein 3 homolo... [more]
CHD5_HUMAN4.566e-2033.70Chromodomain-helicase-DNA-binding protein 5 OS=Hom... [more]
SMCA2_MOUSE7.789e-2036.21Probable global transcription activator SNF2L2 OS=... [more]
SMCA2_HUMAN7.789e-2036.21Probable global transcription activator SNF2L2 OS=... [more]
HRP1_SCHPO1.017e-1934.25Chromodomain helicase hrp1 OS=Schizosaccharomyces ... [more]
ARIP4_XENTR1.017e-1940.44Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE... [more]
CHDM_DROME1.329e-1930.41Chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
CHD8_HUMAN1.735e-1932.58Chromodomain-helicase-DNA-binding protein 8 OS=Hom... [more]
ERC6L_HUMAN2.960e-1936.90DNA excision repair protein ERCC-6-like OS=Homo sa... [more]
SNF2_YEAST3.865e-1933.33Transcription regulatory protein SNF2 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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