CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19 Identity = 59/171 (34.50%), Postives = 85/171 (49.71%), Query Frame = 3 Query: 33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+K NHP L +D + G P TT D V SGKM +L +LL L+++ R+++ S T+ LD+ C R Y Y RLDG T R + + FN + +F F+LS++AGG G+NL + ++++D DWNP D QA R R G Sbjct: 401 LRKCTNHPYL-FDGAEPGPPYTT------------------------DTHLVYNSGKMAILDKLLPKLQEQ-GSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIG 545
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19 Identity = 61/178 (34.27%), Postives = 91/178 (51.12%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L + L+K CNHP LI TG E+ I E++ + + A V +GK+ +L +LL L+ ++++ S + LD+ +RY Y R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + V+FD DWNP ND QA AR R G Sbjct: 1121 LLNTMMELRKCCNHPYLI-----------TGAEEKIVSELREVYDPLAPDFHLQ--ALVRSAGKLVLLDKLLPRLKAG-GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIG 1284
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19 Identity = 65/182 (35.71%), Postives = 95/182 (52.20%), Query Frame = 3 Query: 9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERR-YPYLRLDGTTSISKRQKLVNHFNDPSKDEF--AFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 ++L I L+K+CNHP L+ + + GD E SGK+ V+ LL L ++ R +L S Q LD+ ++ Y R+DG+TSI+ RQ LV++FN K+E+ FLL+++ GG G+NL G +R++LFDPDWNP+ D QA R WR G Sbjct: 587 QMLYGIDILRKICNHPDLV----------------------TREYLLHKEDYNYGDP---EKSGKLKVIRALLT-LWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFN---KNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLG 739
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19 Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 3 Query: 9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFN-DPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 K+ + L+K CNHP LI I +P T F+ D V SGK +L R+L L++R +++L S T LD+ C R + + RLDG+ S S+R+K ++ FN DP + F FL+S++AGG G+NL + ++++D DWNP +D QA R R G Sbjct: 559 KLQNIMMLLRKCCNHPYLIEYPI---DPVTQEFKI--------------------DEELVTNSGKFLILDRMLPELKKR-GHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDP--EVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 712
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19 Identity = 65/183 (35.52%), Postives = 96/183 (52.46%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTG-----GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 LA + LKKLC+HP+L+ + ++ G +F + G S D +E SGKM L LL LR +V S + L++ +L + R + LR+DGT T + +R+K ++ F +KD FLL+++ GG GL L +R+V+FDP WNPA D QA RV+R G Sbjct: 401 LAELGVLKKLCDHPRLL--SARACGLLNLG---AAKFSVQDEIEGEDSSDVDHIDQISDDTLMEESGKMLFLMDLLKKLRDEGHQTLVF-SQSRRILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQ-NKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIG 576
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_RAT (Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus GN=Chd8 PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19 Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L + L+K CNHP LI + F + P + A V +GK+ ++ +LL L+ ++++ S + LD+ +RRY Y R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 1084 LLNTMMELRKCCNHPYLINGAEEKI---LMEFREACHIIPQDFHLQ----------AMVRSAGKLVLIDKLLPKLKAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1247
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_MOUSE (Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19 Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 3 Query: 12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +L + L+K CNHP LI + F + P + A V +GK+ ++ +LL L+ ++++ S + LD+ +RRY Y R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 1086 LLNTMMELRKCCNHPYLINGAEEKI---LMEFREACHIIPQDFHLQ----------AMVRSAGKLVLIDKLLPKLKAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1249
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19 Identity = 62/180 (34.44%), Postives = 93/180 (51.67%), Query Frame = 3 Query: 9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFN-DPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 K+ + L+K CNHP +I I +P T F+ D V SGK +L R+L L++R ++++ S T LD+ C R + + RLDG+ S S+R+K + FN DP D F FL+S++AGG G+NL + ++++D DWNP +D QA R R G Sbjct: 542 KLRNIMMLLRKCCNHPYMIEYPI---DPVTQEFKI--------------------DEELVTNSGKFLILDRMLPELKKR-GHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDP--DVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 695
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.469e-18 Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGKM +L +LL L+ + R+++ S + LD+ + + RLDGT ++R+ ++HFN P ++F FLLS++AGG G+NL+ + +V+FD DWNP D QA AR R G Sbjct: 694 SGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 809
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD6_HUMAN (Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18 Identity = 56/179 (31.28%), Postives = 86/179 (48.04%), Query Frame = 3 Query: 33 LKKLCNHP--------KLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+K CNHP K++ D K+ +P F+ A ++ +GK+ ++ +LL L ++++ S + LD+ +RRY Y R+DG + RQ ++ F P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 741 LRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQL---------------------QAMIQAAGKLVLIDKLLPKLIAG-GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 897 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |