CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 59/171 (34.50%), Postives = 85/171 (49.71%), Query Frame = 3
Query:   33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+K  NHP L +D  + G P TT                        D   V  SGKM +L +LL  L+++   R+++ S  T+ LD+    C  R Y Y RLDG T    R + +  FN  +  +F F+LS++AGG G+NL   + ++++D DWNP  D QA  R  R G
Sbjct:  401 LRKCTNHPYL-FDGAEPGPPYTT------------------------DTHLVYNSGKMAILDKLLPKLQEQ-GSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIG 545          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 61/178 (34.27%), Postives = 91/178 (51.12%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  +  L+K CNHP LI           TG E+ I     E++   +  +     A V  +GK+ +L +LL  L+     ++++ S   + LD+       +RY Y R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  V+FD DWNP ND QA AR  R G
Sbjct: 1121 LLNTMMELRKCCNHPYLI-----------TGAEEKIVSELREVYDPLAPDFHLQ--ALVRSAGKLVLLDKLLPRLKAG-GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIG 1284          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 65/182 (35.71%), Postives = 95/182 (52.20%), Query Frame = 3
Query:    9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERR-YPYLRLDGTTSISKRQKLVNHFNDPSKDEF--AFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            ++L  I  L+K+CNHP L+                         +      +  GD    E SGK+ V+  LL  L ++   R +L S   Q LD+     ++     Y R+DG+TSI+ RQ LV++FN   K+E+   FLL+++ GG G+NL G +R++LFDPDWNP+ D QA  R WR G
Sbjct:  587 QMLYGIDILRKICNHPDLV----------------------TREYLLHKEDYNYGDP---EKSGKLKVIRALLT-LWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFN---KNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLG 739          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HELLS_HUMAN (Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 3
Query:    9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFN-DPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            K+   +  L+K CNHP LI   I   +P T  F+                     D   V  SGK  +L R+L  L++R   +++L S  T  LD+    C  R + + RLDG+ S S+R+K ++ FN DP  + F FL+S++AGG G+NL   + ++++D DWNP +D QA  R  R G
Sbjct:  559 KLQNIMMLLRKCCNHPYLIEYPI---DPVTQEFKI--------------------DEELVTNSGKFLILDRMLPELKKR-GHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDP--EVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 712          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 65/183 (35.52%), Postives = 96/183 (52.46%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTG-----GDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            LA +  LKKLC+HP+L+  + ++      G     +F   +   G   S         D   +E SGKM  L  LL  LR      +V  S   + L++  +L + R +  LR+DGT T + +R+K ++ F   +KD   FLL+++ GG GL L   +R+V+FDP WNPA D QA  RV+R G
Sbjct:  401 LAELGVLKKLCDHPRLL--SARACGLLNLG---AAKFSVQDEIEGEDSSDVDHIDQISDDTLMEESGKMLFLMDLLKKLRDEGHQTLVF-SQSRRILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQ-NKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIG 576          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_RAT (Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus GN=Chd8 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  +  L+K CNHP LI    +        F +     P +              A V  +GK+ ++ +LL  L+     ++++ S   + LD+      +RRY Y R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct: 1084 LLNTMMELRKCCNHPYLINGAEEKI---LMEFREACHIIPQDFHLQ----------AMVRSAGKLVLIDKLLPKLKAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1247          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD8_MOUSE (Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 3
Query:   12 ILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +L  +  L+K CNHP LI    +        F +     P +              A V  +GK+ ++ +LL  L+     ++++ S   + LD+      +RRY Y R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct: 1086 LLNTMMELRKCCNHPYLINGAEEKI---LMEFREACHIIPQDFHLQ----------AMVRSAGKLVLIDKLLPKLKAG-GHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1249          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HELLS_MOUSE (Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 62/180 (34.44%), Postives = 93/180 (51.67%), Query Frame = 3
Query:    9 KILAYITALKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFN-DPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            K+   +  L+K CNHP +I   I   +P T  F+                     D   V  SGK  +L R+L  L++R   ++++ S  T  LD+    C  R + + RLDG+ S S+R+K +  FN DP  D F FL+S++AGG G+NL   + ++++D DWNP +D QA  R  R G
Sbjct:  542 KLRNIMMLLRKCCNHPYMIEYPI---DPVTQEFKI--------------------DEELVTNSGKFLILDRMLPELKKR-GHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDP--DVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 695          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1_YEAST (Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae GN=CHD1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.469e-18
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGKM +L +LL  L+ +   R+++ S   + LD+       +   + RLDGT   ++R+  ++HFN P  ++F FLLS++AGG G+NL+  + +V+FD DWNP  D QA AR  R G
Sbjct:  694 SGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 809          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD6_HUMAN (Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18
Identity = 56/179 (31.28%), Postives = 86/179 (48.04%), Query Frame = 3
Query:   33 LKKLCNHP--------KLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+K CNHP        K++ D  K+ +P    F+                       A ++ +GK+ ++ +LL  L      ++++ S   + LD+      +RRY Y R+DG    + RQ  ++ F  P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct:  741 LRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQL---------------------QAMIQAAGKLVLIDKLLPKLIAG-GHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 897          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
ISWI_DROME3.865e-1934.50Chromatin-remodeling complex ATPase chain Iswi OS=... [more]
CHD8_DANRE3.865e-1934.27Chromodomain-helicase-DNA-binding protein 8 OS=Dan... [more]
RHP26_SCHPO6.594e-1935.71DNA repair protein rhp26 OS=Schizosaccharomyces po... [more]
HELLS_HUMAN6.594e-1935.00Lymphoid-specific helicase OS=Homo sapiens GN=HELL... [more]
ERC6L_BOVIN6.594e-1935.52DNA excision repair protein ERCC-6-like OS=Bos tau... [more]
CHD8_RAT6.594e-1932.02Chromodomain-helicase-DNA-binding protein 8 OS=Rat... [more]
CHD8_MOUSE6.594e-1932.02Chromodomain-helicase-DNA-binding protein 8 OS=Mus... [more]
HELLS_MOUSE8.611e-1934.44Lymphocyte-specific helicase OS=Mus musculus GN=He... [more]
CHD1_YEAST1.469e-1840.17Chromo domain-containing protein 1 OS=Saccharomyce... [more]
CHD6_HUMAN3.272e-1831.28Chromodomain-helicase-DNA-binding protein 6 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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