CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: FFT2_SCHPO (Uncharacterized ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe GN=fft2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.274e-18
Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 3
Query:  159 SWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S+T  D  W++ SGK+ VL  LL  +++    RI+L S +TQ LD+  Q+    +  Y+RLDG+T +  RQ +++ F+   +D   FLLS+KAGG G+NL   N ++L+D  +NP +D QA  R  R G
Sbjct:  912 SYTLKDDPWMD-SGKIRVLKELLPKMKEE-GSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHK-EEDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVG 1037          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 47/121 (38.84%), Postives = 77/121 (63.64%), Query Frame = 3
Query:  183 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            W++ SGK+  L +LL  +     +++++ S +TQ LD+   +     Y +LRLDG+T ++ RQ L++ F +  KD   F+LS+KAGG G+NL+  N +++FD  +NP +D+QAA R  R G
Sbjct:  945 WMQ-SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYE-DKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVG 1063          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17
Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+K CNHP LI            G E+ I     + ++  +  +     A ++ +GK+ ++ +LL  ++     ++++ S   + LD+       +RY Y R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct: 1139 LRKCCNHPYLI-----------KGAEEKILGEFRDTYNPSASDFHLQ--AMIQSAGKLVLIDKLLPKMKAG-GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1295          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17
Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            L+K CNHP LI            G E+ I     + ++  +  +     A ++ +GK+ ++ +LL  ++     ++++ S   + LD+       +RY Y R+DG    + RQ  ++ F+ P  D F FLL ++AGG G+NL   +  ++FD DWNP ND QA AR  R G
Sbjct: 1140 LRKCCNHPYLI-----------KGAEEKILGEFRDTYNPAASDFHLQ--AMIQSAGKLVLIDKLLPKMKAG-GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1296          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1L_BOVIN (Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus GN=CHD1L PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 49/120 (40.83%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +E SGK+H+L +LL  L  +   R++L S  TQ LD+       R Y Y R+DG+    +R   + +F    +  F FLLS++AGG G+NL   + ++ FD D+NP ND QAAAR  R G
Sbjct:  345 IEASGKLHLLDKLLAFLYSK-GHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQ--QPIFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIG 461          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ARIP4_HUMAN (Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP------------------YLRLDGTTSISKRQKLVNHFNDPSK-DEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +E S KM +L  L+     +  D+I++ S    TL L  +   +R  P                  Y RLDG+T   +R++L+N FNDPS    + FLLS++AG  G+NLIG NR+V+FD  WNP +D QA  RV+R G
Sbjct:  717 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG 854          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 41/120 (34.17%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +E  GK+ +L +++  L+++   R+++ + +   LDL    C  +++ Y R+DG    ++RQ  ++ FN  + ++F FLLS++AGG G+NL   + ++++D DWNP  D QA AR  R G
Sbjct:  591 LESCGKLQLLDKMMVKLKEQ-GHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 709          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 62/179 (34.64%), Postives = 94/179 (52.51%), Query Frame = 3
Query:   15 LAYITALKKLCNHPKLIYD-TIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            LA +  LKKLC+HP+L+     +  N GT  F         ++ +  S      D   ++ SGKM  L  LL  L+      +V  S   + L++  +L + + +  LR+DGT T + +R+K +  F   +K+   FLL+++ GG GL L    R+V+FDP WNPA D QA  RV+R G
Sbjct:  402 LAELGVLKKLCDHPRLLSARACRLLNLGTATFSAQDENEQEDVSNMNSIDHLP-DKTLIQESGKMIFLMSLLERLQDEGHQTLVF-SQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQ-NKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIG 577          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK++ L  LL  L+ +   R+++ S  T+ +DL  +    R++ Y+RLDG++ IS+R+ +V  F + + D F FLLS++AGG G+NL   + ++ +D DWNP  D+QA  R  R G
Sbjct: 1100 SGKLYALDVLLTRLKSQ-GHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1214          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ARIP4_MOUSE (Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17
Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP------------------YLRLDGTTSISKRQKLVNHFNDPSK-DEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +E S KM +L  L+     +  D+I++ S    TL L  +   +R  P                  Y RLDG+T   +R++L+N FNDPS    + FLLS++AG  G+NLIG NR+V+FD  WNP +D QA  RV+R G
Sbjct:  716 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVRNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG 853          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
FFT2_SCHPO4.274e-1840.31Uncharacterized ATP-dependent helicase fft2 OS=Sch... [more]
FUN30_YEAST5.582e-1838.84Uncharacterized ATP-dependent helicase FUN30 OS=Sa... [more]
CHD9_MOUSE1.243e-1731.58Chromodomain-helicase-DNA-binding protein 9 OS=Mus... [more]
CHD9_HUMAN1.243e-1731.58Chromodomain-helicase-DNA-binding protein 9 OS=Hom... [more]
CHD1L_BOVIN2.121e-1740.83Chromodomain-helicase-DNA-binding protein 1-like O... [more]
ARIP4_HUMAN2.121e-1738.85Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=... [more]
PKL_ARATH2.770e-1734.17CHD3-type chromatin-remodeling factor PICKLE OS=Ar... [more]
ERC6L_MOUSE2.770e-1734.64DNA excision repair protein ERCC-6-like OS=Mus mus... [more]
INO80_HUMAN3.618e-1739.32Putative DNA helicase INO80 complex homolog 1 OS=H... [more]
ARIP4_MOUSE3.618e-1738.85Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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