CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: FFT2_SCHPO (Uncharacterized ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe GN=fft2 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.274e-18 Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 3 Query: 159 SWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S+T D W++ SGK+ VL LL +++ RI+L S +TQ LD+ Q+ + Y+RLDG+T + RQ +++ F+ +D FLLS+KAGG G+NL N ++L+D +NP +D QA R R G Sbjct: 912 SYTLKDDPWMD-SGKIRVLKELLPKMKEE-GSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHK-EEDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVG 1037
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: FUN30_YEAST (Uncharacterized ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae GN=FUN30 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18 Identity = 47/121 (38.84%), Postives = 77/121 (63.64%), Query Frame = 3 Query: 183 WVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 W++ SGK+ L +LL + +++++ S +TQ LD+ + Y +LRLDG+T ++ RQ L++ F + KD F+LS+KAGG G+NL+ N +++FD +NP +D+QAA R R G Sbjct: 945 WMQ-SGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYE-DKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVG 1063
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17 Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 3 Query: 33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+K CNHP LI G E+ I + ++ + + A ++ +GK+ ++ +LL ++ ++++ S + LD+ +RY Y R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 1139 LRKCCNHPYLI-----------KGAEEKILGEFRDTYNPSASDFHLQ--AMIQSAGKLVLIDKLLPKMKAG-GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1295
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17 Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 3 Query: 33 LKKLCNHPKLIYDTIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 L+K CNHP LI G E+ I + ++ + + A ++ +GK+ ++ +LL ++ ++++ S + LD+ +RY Y R+DG + RQ ++ F+ P D F FLL ++AGG G+NL + ++FD DWNP ND QA AR R G Sbjct: 1140 LRKCCNHPYLI-----------KGAEEKILGEFRDTYNPAASDFHLQ--AMIQSAGKLVLIDKLLPKMKAG-GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 1296
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1L_BOVIN (Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus GN=CHD1L PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17 Identity = 49/120 (40.83%), Postives = 70/120 (58.33%), Query Frame = 3 Query: 186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +E SGK+H+L +LL L + R++L S TQ LD+ R Y Y R+DG+ +R + +F + F FLLS++AGG G+NL + ++ FD D+NP ND QAAAR R G Sbjct: 345 IEASGKLHLLDKLLAFLYSK-GHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQ--QPIFTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIG 461
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ARIP4_HUMAN (Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17 Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = 3 Query: 186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP------------------YLRLDGTTSISKRQKLVNHFNDPSK-DEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +E S KM +L L+ + D+I++ S TL L + +R P Y RLDG+T +R++L+N FNDPS + FLLS++AG G+NLIG NR+V+FD WNP +D QA RV+R G Sbjct: 717 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG 854
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17 Identity = 41/120 (34.17%), Postives = 74/120 (61.67%), Query Frame = 3 Query: 186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +E GK+ +L +++ L+++ R+++ + + LDL C +++ Y R+DG ++RQ ++ FN + ++F FLLS++AGG G+NL + ++++D DWNP D QA AR R G Sbjct: 591 LESCGKLQLLDKMMVKLKEQ-GHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 709
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17 Identity = 62/179 (34.64%), Postives = 94/179 (52.51%), Query Frame = 3 Query: 15 LAYITALKKLCNHPKLIYD-TIKSGNPGTTGFEDCIRFFPPEMFSGRSGSWTGGDGAWVELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGT-TSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 LA + LKKLC+HP+L+ + N GT F ++ + S D ++ SGKM L LL L+ +V S + L++ +L + + + LR+DGT T + +R+K + F +K+ FLL+++ GG GL L R+V+FDP WNPA D QA RV+R G Sbjct: 402 LAELGVLKKLCDHPRLLSARACRLLNLGTATFSAQDENEQEDVSNMNSIDHLP-DKTLIQESGKMIFLMSLLERLQDEGHQTLVF-SQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQ-NKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIG 577
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_HUMAN (Putative DNA helicase INO80 complex homolog 1 OS=Homo sapiens GN=INO80 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17 Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGK++ L LL L+ + R+++ S T+ +DL + R++ Y+RLDG++ IS+R+ +V F + + D F FLLS++AGG G+NL + ++ +D DWNP D+QA R R G Sbjct: 1100 SGKLYALDVLLTRLKSQ-GHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1214
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: ARIP4_MOUSE (Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17 Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = 3 Query: 186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYP------------------YLRLDGTTSISKRQKLVNHFNDPSK-DEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +E S KM +L L+ + D+I++ S TL L + +R P Y RLDG+T +R++L+N FNDPS + FLLS++AG G+NLIG NR+V+FD WNP +D QA RV+R G Sbjct: 716 LENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVRNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYG 853 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |