CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1L_DANRE (Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio GN=chd1l PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17 Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 3 Query: 186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 VE SGK+ +L +L +L Q ++L S T+ LD+ R Y Y RLDG+ +R + +F+ +KD F FLLS+KAGG G+NL + ++ D D+NP ND QAAAR R G Sbjct: 332 VEASGKLSLLDSMLAYL-QEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFS--TKDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIG 448
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17 Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ LA+LL +L+ R ++ + T+ LD+ Q Y Y+RLDG T I RQ L FN + F+LSS++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1310 GKLQKLAQLLQNLKDN-GHRALIFTQMTKVLDILEQFLNFHGYLYMRLDGATKIEDRQILTERFNSDPRIT-VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1423
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17 Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGK++ L LL L+ + R+++ S T+ +DL + R++ Y+RLDG++ IS+R+ +V F + D F FLLS++AGG G+NL + ++ +D DWNP D+QA R R G Sbjct: 1103 SGKLYALDVLLTRLKSQ-GHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1217
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17 Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ LA LL L+ R ++ + T+ LD+ Q Y Y+RLDG T I RQ L FN S+ F+LSS++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1246 GKLQKLAILLQQLKDN-GHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRIT-VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1359
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17 Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ LA LL L+ R+++ + T+ LD+ Q + YLRLDG+T + +RQ L+ FN K F F+LS+++GG G+NL G + +V +D DWNP D QA R R G Sbjct: 2043 GKLQTLAVLLRQLKAE-GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFN-ADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 2156
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_SCHPO (Putative DNA helicase ino80 OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4) HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17 Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGK+ L +LL L+ D R+++ T+ +DL + R+Y YLRLDG++ IS+R+ +V + + F FLLS++AGG G+NL + ++ +D DWNP+ D QA R R G Sbjct: 1428 SGKLSKLDKLLVELKAN-DHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQT-RPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIG 1542
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16 Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ +L +LL L Q R ++ + T+ LD+ Q + YLRLDG T + +RQ L + FN+ + F+LS+++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1371 GKLQILDKLLRKL-QAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGATKVEQRQILTDRFNNDPRI-LCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIG 1484
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16 Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ L +LL L+ R ++ + T+ LD+ Q + YLRLDGTT + +RQ L + FN+ ++ AF+LSS++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1331 GKLQRLDKLLRDLKAG-GHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRI-LAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIG 1444
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16 Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 +GK+ VL LL L+ R+++ S T+ +DL + R++ Y+RLDG++ IS R+ +V F + D F FLLS++AGG G+NL + ++ +D DWNP D+QA R R G Sbjct: 1155 AGKLFVLDNLLTRLKAN-GHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRA-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1269
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16 Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ LA LL L+ R ++ + T+ LD+ Q Y Y+RLDG T I RQ L FN K F+LSS++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1178 GKLQKLAILLQQLKDG-GHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGATKIEDRQILTERFNSDPKIT-VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1291 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |