CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: CHD1L_DANRE (Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio GN=chd1l PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  186 VELSGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            VE SGK+ +L  +L +L Q     ++L S  T+ LD+       R Y Y RLDG+    +R   + +F+  +KD F FLLS+KAGG G+NL   + ++  D D+NP ND QAAAR  R G
Sbjct:  332 VEASGKLSLLDSMLAYL-QEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFS--TKDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIG 448          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  LA+LL +L+     R ++ +  T+ LD+  Q      Y Y+RLDG T I  RQ L   FN   +    F+LSS++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1310 GKLQKLAQLLQNLKDN-GHRALIFTQMTKVLDILEQFLNFHGYLYMRLDGATKIEDRQILTERFNSDPRIT-VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1423          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_MOUSE (Putative DNA helicase INO80 complex homolog 1 OS=Mus musculus GN=Ino80 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK++ L  LL  L+ +   R+++ S  T+ +DL  +    R++ Y+RLDG++ IS+R+ +V  F   + D F FLLS++AGG G+NL   + ++ +D DWNP  D+QA  R  R G
Sbjct: 1103 SGKLYALDVLLTRLKSQ-GHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1217          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  LA LL  L+     R ++ +  T+ LD+  Q      Y Y+RLDG T I  RQ L   FN  S+    F+LSS++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1246 GKLQKLAILLQQLKDN-GHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRIT-VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1359          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  LA LL  L+     R+++ +  T+ LD+  Q      + YLRLDG+T + +RQ L+  FN   K  F F+LS+++GG G+NL G + +V +D DWNP  D QA  R  R G
Sbjct: 2043 GKLQTLAVLLRQLKAE-GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFN-ADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 2156          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_SCHPO (Putative DNA helicase ino80 OS=Schizosaccharomyces pombe GN=ino80 PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L +LL  L+   D R+++    T+ +DL  +    R+Y YLRLDG++ IS+R+ +V  +     + F FLLS++AGG G+NL   + ++ +D DWNP+ D QA  R  R G
Sbjct: 1428 SGKLSKLDKLLVELKAN-DHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQT-RPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIG 1542          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16
Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+ +L +LL  L Q    R ++ +  T+ LD+  Q      + YLRLDG T + +RQ L + FN+  +    F+LS+++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1371 GKLQILDKLLRKL-QAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGATKVEQRQILTDRFNNDPRI-LCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIG 1484          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  L +LL  L+     R ++ +  T+ LD+  Q      + YLRLDGTT + +RQ L + FN+ ++   AF+LSS++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1331 GKLQRLDKLLRDLKAG-GHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRI-LAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIG 1444          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            +GK+ VL  LL  L+     R+++ S  T+ +DL  +    R++ Y+RLDG++ IS R+ +V  F   + D F FLLS++AGG G+NL   + ++ +D DWNP  D+QA  R  R G
Sbjct: 1155 AGKLFVLDNLLTRLKAN-GHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRA-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1269          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  LA LL  L+     R ++ +  T+ LD+  Q      Y Y+RLDG T I  RQ L   FN   K    F+LSS++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1178 GKLQKLAILLQQLKDG-GHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGATKIEDRQILTERFNSDPKIT-VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1291          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
CHD1L_DANRE4.725e-1741.67Chromodomain-helicase-DNA-binding protein 1-like O... [more]
SWR1_KLULA6.171e-1740.52Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3... [more]
INO80_MOUSE6.171e-1739.32Putative DNA helicase INO80 complex homolog 1 OS=M... [more]
SWR1_YEAST8.060e-1741.38Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 ... [more]
SRCAP_HUMAN8.060e-1740.52Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2[more]
INO80_SCHPO8.060e-1739.32Putative DNA helicase ino80 OS=Schizosaccharomyces... [more]
SWR1_GIBZE1.053e-1638.79Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1[more]
SWR1_EMENI1.053e-1640.52Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 ... [more]
INO80_DROME1.053e-1639.32Putative DNA helicase Ino80 OS=Drosophila melanoga... [more]
SWR1_CANGA1.375e-1641.38Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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