CX289077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16 Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ LA LL L++ R ++ + T+ LD+ Q Y Y+RLDG T I RQ L FN + F+LSS++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1217 GKLQSLAVLLRRLKEE-GHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDPRIT-VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1330
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16 Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ LA LL L R ++ + T+ LD+ Q Y Y+RLDG T I RQ L FN SK F+LS+++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1332 GKLQKLATLLQDLTAN-GHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDSKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1445
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: TTF2_DROME (Transcription termination factor 2 OS=Drosophila melanogaster GN=lds PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16 Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3 Query: 195 SGKMHVLARLLG-HLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 S K++++ ++L + + +DD+ ++VS +T LD+ + L L+GT + RQ +VN FND + + LLS AGG GLNLIG N L+L D WNP + QA R++R G Sbjct: 889 SSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVG 1006
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16 Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ VL RLL L R+++ + T+ LD+ Q + YLRLDG T I +RQ L FN+ K F+LS+++GG G+NL G + ++ +D DWNP D QA R R G Sbjct: 991 GKLQVLDRLLKDLVSN-GHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIG 1104
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16 Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ LA LL L + R ++ + T+ LD+ Q Y Y+RLDG T I RQ L FN K F+LS+++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1366 GKLQKLATLLQELTSQ-GHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1479
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16 Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ L +LL L+ R ++ + T+ LD+ Q + YLRLDGTT + +RQ L + FN+ + F+LSS++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1378 GKLQRLDKLLRDLKAG-GHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDDRI-LVFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIG 1491
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16 Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGK+ L +LL + R ++ +L + + + LD+ Y ++RLDG+T + +RQK+V FN+ K F F+ S+++G G+NL N ++ +D DWNP+ DKQA R R G Sbjct: 1767 SGKLCALEKLLSKCK-REGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIG 1881
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.000e-16 Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 3 Query: 198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 GK+ L +LL L Q R ++ + T+ LD+ Q + YLRLDG T + +RQ L + FN + F+LS+++GG G+NL G + ++ +D DWNPA DKQ R R G Sbjct: 1506 GKLQALDKLLRKL-QAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGATKVEQRQILTDRFNHDPRI-LCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIG 1619
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 4.000e-16 Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGK+ L LL LR + R++L + T+ L++ R+Y YLRLDG+++I R+ +V F S D F FLLS++AGG G+NL + ++ ++ DWNP D QA R R G Sbjct: 1205 SGKLQTLDILLKRLRAG-NHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1319
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 5.224e-16 Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 3 Query: 195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545 SGK+ L LL LRQ D R+++ T+ +DL + R++ Y+RLDG++ + R+ LV+ + + F FLLS++AGG G+NL + ++ +D DWNP D QA R R G Sbjct: 1141 SGKLSKLDELLVDLRQN-DHRVLIYFQMTKMMDLMEEYLTYRQHKYIRLDGSSKLDDRRDLVHDWQT-KPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1255 The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 152
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bpback to top |