CX289077

Overview
NameCX289077
Unique NameCX289077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  LA LL  L++    R ++ +  T+ LD+  Q      Y Y+RLDG T I  RQ L   FN   +    F+LSS++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1217 GKLQSLAVLLRRLKEE-GHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDPRIT-VFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1330          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  LA LL  L      R ++ +  T+ LD+  Q      Y Y+RLDG T I  RQ L   FN  SK    F+LS+++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1332 GKLQKLATLLQDLTAN-GHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDSKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1445          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: TTF2_DROME (Transcription termination factor 2 OS=Drosophila melanogaster GN=lds PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  195 SGKMHVLARLLG-HLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            S K++++ ++L   + + +DD+ ++VS +T  LD+      +     L L+GT  +  RQ +VN FND +  +   LLS  AGG GLNLIG N L+L D  WNP  + QA  R++R G
Sbjct:  889 SSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVG 1006          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+ VL RLL  L      R+++ +  T+ LD+  Q      + YLRLDG T I +RQ L   FN+  K    F+LS+++GG G+NL G + ++ +D DWNP  D QA  R  R G
Sbjct:  991 GKLQVLDRLLKDLVSN-GHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIG 1104          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  LA LL  L  +   R ++ +  T+ LD+  Q      Y Y+RLDG T I  RQ L   FN   K    F+LS+++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1366 GKLQKLATLLQELTSQ-GHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIG 1479          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  L +LL  L+     R ++ +  T+ LD+  Q      + YLRLDGTT + +RQ L + FN+  +    F+LSS++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1378 GKLQRLDKLLRDLKAG-GHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDDRI-LVFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIG 1491          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: HEPF1_PLAF7 (Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum (isolate 3D7) GN=PF08_0048 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16
Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L +LL   + R  ++ +L + + + LD+         Y ++RLDG+T + +RQK+V  FN+  K  F F+ S+++G  G+NL   N ++ +D DWNP+ DKQA  R  R G
Sbjct: 1767 SGKLCALEKLLSKCK-REGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIG 1881          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.000e-16
Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 3
Query:  198 GKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            GK+  L +LL  L Q    R ++ +  T+ LD+  Q      + YLRLDG T + +RQ L + FN   +    F+LS+++GG G+NL G + ++ +D DWNPA DKQ   R  R G
Sbjct: 1506 GKLQALDKLLRKL-QAGGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGATKVEQRQILTDRFNHDPRI-LCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIG 1619          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.000e-16
Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L  LL  LR   + R++L +  T+ L++       R+Y YLRLDG+++I  R+ +V  F   S D F FLLS++AGG G+NL   + ++ ++ DWNP  D QA  R  R G
Sbjct: 1205 SGKLQTLDILLKRLRAG-NHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRS-DIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1319          
BLAST of CX289077 vs. ExPASy Swiss-Prot
Match: INO80_DEBHA (Putative DNA helicase INO80 OS=Debaryomyces hansenii GN=INO80 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.224e-16
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  195 SGKMHVLARLLGHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNHFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDG 545
            SGK+  L  LL  LRQ  D R+++    T+ +DL  +    R++ Y+RLDG++ +  R+ LV+ +     + F FLLS++AGG G+NL   + ++ +D DWNP  D QA  R  R G
Sbjct: 1141 SGKLSKLDELLVDLRQN-DHRVLIYFQMTKMMDLMEEYLTYRQHKYIRLDGSSKLDDRRDLVHDWQT-KPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1255          
The following BLAST results are available for this feature:
BLAST of CX289077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
SWR1_ASHGO1.375e-1640.52Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1[more]
SWR1_DEBHA1.796e-1641.38Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=... [more]
TTF2_DROME3.063e-1638.14Transcription termination factor 2 OS=Drosophila m... [more]
SWR1_SCHPO3.063e-1640.52Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1... [more]
SWR1_CANAL3.063e-1640.52Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=... [more]
SWR1_ASPFU3.063e-1639.66Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=... [more]
HEPF1_PLAF73.063e-1636.75Probable ATP-dependent helicase PF08_0048 OS=Plasm... [more]
SWR1_NEUCR4.000e-1638.79Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 ... [more]
INO80_ARATH4.000e-1640.17DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
INO80_DEBHA5.224e-1638.46Putative DNA helicase INO80 OS=Debaryomyces hansen... [more]

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Properties
Property NameValue
Genbank descriptionC02008H02SK IF1 Citrus clementina cDNA clone C02008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289077 ID=CX289077; Name=CX289077; organism=Citrus clementina; type=EST; length=545bp
AGCAATCCAAGATTTTGGCTTATATCACAGCTCTTAAGAAGCTCTGTAAT
CATCCCAAGCTTATCTACGATACTATAAAAAGTGGAAATCCAGGAACCAC
AGGATTTGAGGACTGTATACGTTTTTTCCCTCCAGAGATGTTCTCTGGAA
GATCTGGATCATGGACTGGAGGTGATGGGGCTTGGGTTGAACTATCTGGA
AAAATGCATGTCTTAGCCCGGTTACTGGGCCATCTACGGCAGAGAACTGA
TGACCGAATTGTTCTGGTCTCAAATTATACTCAGACACTGGATCTATTTG
CTCAATTGTGTCGTGAAAGAAGGTATCCATACTTGAGGCTGGATGGAACT
ACATCAATCAGCAAAAGACAGAAGTTAGTGAATCACTTTAATGACCCATC
AAAGGATGAGTTTGCTTTTCTCTTAAGCAGCAAGGCTGGTGGCTGTGGCC
TCAATTTAATTGGTGGTAATCGACTTGTGTTGTTTGATCCTGATTGGAAT
CCAGCCAATGATAAACAAGCTGCTGCAAGAGTTTGGAGGGATGGA
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