CX289079

Overview
NameCX289079
Unique NameCX289079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 46/120 (38.33%), Postives = 61/120 (50.83%), Query Frame = 2
Query:   38 YGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            Y VSLVDGFN+PM+VTP  G G C +  C A++   CP  LQ       G VVAC S C  FG  + CC     + + C  +++S+ F   CP   +YA D    +  CS      + FC
Sbjct:  124 YDVSLVDGFNLPMSVTPQGGTGTCKMGSCAANVNLVCPSELQ--KIGSDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFC 241          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.784e-19
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 2
Query:   23 NDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            +D   Y VSLVDGFN+P+ + P   +  C    C+AD+ A CP  L+V           C S C  F TD+ CCRN Y     C A+++S+ FK+ CP   +YA D  +    C+S  +  ++FC
Sbjct:  113 SDQDYYDVSLVDGFNIPLAINPTNAQ--CTAPACKADINAVCPSELKVDG--------GCNSACNVFKTDQYCCRNAY--VDNCPATNYSKIFKNQCPQAYSYAKDDTATF-ACASGTDYSIVFC 224          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 42/128 (32.81%), Postives = 62/128 (48.44%), Query Frame = 2
Query:   14 HGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            +G N+L  + +SLVDGFNVPM  +P    G    + C AD+   CP  L+ +          C + C  F TD+ CC +      +C  + +S FFK  CP   +Y  D P     C+   + +V+FC
Sbjct:   88 NGFNNLDFFDISLVDGFNVPMDFSP-TSNGCTRGISCTADINGQCPSELKTQG--------GCNNPCTVFKTDQYCCNSG-----SCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFC 201          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 2
Query:   23 NDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            N+L  Y +SLVDGFN+PM  +P      C  + C AD+   CP  L  R+P G      C + C  F T++ CC N   S   C  + +S FFK  CP   +Y  D P+    C++    +V+FC
Sbjct:  112 NNLDFYDISLVDGFNIPMEFSPTSSN--CHRILCTADINGQCPNVL--RAPGG------CNNPCTVFQTNQYCCTNGQGS---CSDTEYSRFFKQRCPDAYSYPQDDPTSTFTCTN-TNYRVVFC 222          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 45/125 (36.00%), Postives = 62/125 (49.60%), Query Frame = 2
Query:   23 NDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            N+L  + +SLVDGFNV M  +P  G G    + C AD+   CP  L  R+P G      C + C  F TD+ CC +       C  ++FS+FFK  CP   +Y  D  +    C +    KV+FC
Sbjct:  114 NNLDFFDISLVDGFNVAMEFSPTSG-GCTRGIKCTADINGQCPNEL--RAPGG------CNNPCTVFKTDQYCCNSG-----NCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFC 224          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 40/125 (32.00%), Postives = 58/125 (46.40%), Query Frame = 2
Query:   23 NDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            N+L  + +SL+DGFNVPM+  P  G G      C  D+ A CP  L+            C + C  F  DE CC    ++   C  +++S +FK  CP   +Y  D  +    C +    KV+FC
Sbjct:  112 NNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDG--------VCNNACPVFKKDEYCCVG--SAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 226          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 43/132 (32.58%), Postives = 62/132 (46.97%), Query Frame = 2
Query:    2 FSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 397
            F+L+  + D     +SLVDGFN+PM  +P  G   C  + C A +   CP  L+ +          C + C    T+E CC N    P +C  +  S FFK  CP   +Y  D P+ +  C S    +V+FC
Sbjct:  109 FALNQPNQDFVD--ISLVDGFNIPMEFSPTNGG--CRNLRCTAPINEQCPAQLKTQG--------GCNNPCTVIKTNEYCCTN---GPGSCGPTDLSRFFKERCPDAYSYPQDDPTSLFTCPSGTNYRVVFC 225          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 44/125 (35.20%), Postives = 61/125 (48.80%), Query Frame = 2
Query:   29 LSSYGVSLVDGFNVPMTVTP-HEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHEC-SSPRELKVIFC 397
            L  + +SLVDGFN+PMT  P +   G C  + C A++   CP+ L+V   PG      C + C  FG  + CC     +   C  + FS+FFK  CP   +Y  D P+    C       +VIFC
Sbjct:  114 LDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPRELRV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFC 225          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14
Identity = 43/127 (33.86%), Postives = 62/127 (48.82%), Query Frame = 2
Query:   23 NDLSSYGVSLVDGFNVPMTVTP-HEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHEC-SSPRELKVIFC 397
            ++L  + +SLVDGFN+PMT  P +   G C  + C A++   CP +L+V   PG      C + C  FG  + CC     +   C  +  S FFK  CP   +Y  D P+    C S     +V+FC
Sbjct:  104 SNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 217          
BLAST of CX289079 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14
Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 2
Query:   23 NDLSSYGVSLVDGFNVPMTVTPHE-GKGVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHEC-SSPRELKVIFC 397
            ++L  + +SLVDGFN+PMT  P +   G C  + C A++   CP+ L+V   PG      C + C  FG  + CC     +   C  +  S+FFK  CP   +Y  D P+    C S     +V+FC
Sbjct:  112 SNLDFWDISLVDGFNIPMTFAPTKPSAGKCHAIHCTANINGECPRALKV---PG-----GCNNPCTTFGGQQYCC-----TQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFC 225          
The following BLAST results are available for this feature:
BLAST of CX289079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TLP2_PRUPE4.392e-1938.33Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
PRR3_JUNAS9.784e-1936.80Pathogenesis-related protein OS=Juniperus ashei PE... [more]
P21_SOYBN3.480e-1632.81Protein P21 OS=Glycine max PE=1 SV=1[more]
OSL3_ARATH2.946e-1536.00Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
TLP_ACTDE5.025e-1536.00Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
ZEAM_MAIZE1.462e-1432.00Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2[more]
PRR1_TOBAC1.462e-1432.58Pathogenesis-related protein R major form OS=Nicot... [more]
OSMO_TOBAC2.494e-1435.20Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
TPM1_SOLLC4.254e-1433.86Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
OS81_SOLCO4.254e-1433.86Osmotin-like protein OSML81 OS=Solanum commersonii... [more]

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Properties
Property NameValue
Genbank descriptionC02008H04SK IF1 Citrus clementina cDNA clone C02008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289079 ID=CX289079; Name=CX289079; organism=Citrus clementina; type=EST; length=578bp
GTTCAGCCTCCACCACGGCCACAACGACCTCTCCTCCTACGGTGTCTCTC
TCGTCGACGGCTTCAACGTCCCAATGACTGTCACCCCGCACGAGGGCAAG
GGCGTCTGTCCGGTGGTGGGTTGTCGCGCTGATCTGCTAGCCACGTGTCC
TCAGAACCTGCAGGTGAGGTCACCGCCGGGTCACGGCCCCGTGGTGGCAT
GTAAGAGTGGGTGTGAGGCGTTTGGTACGGACGAGCTGTGTTGTAGGAAC
CATTACAACAGTCCGCAGACATGTCGGGCTTCGAGCTTTTCGGAGTTCTT
CAAGCACGCTTGTCCAGCCACGATGACTTATGCCCATGATAGCCCTTCGC
TGATGCATGAGTGCTCCTCGCCACGTGAGCTCAAAGTTATTTTCTGTCAC
TAGAGAAGCATGAGAATAATAATAAGCTGGACCATCAAGCTTCACAGTGC
TTAGGATTGTTGTGTTTGTTTTCGTCAATTAGCAGTATCTTGCTTTTTAA
TTAATCTCGTAACTAAAAGGAGAAATTAAAAATGATCAATGTGAGCTTGT
GTCATGTTGGGTGTCATCAGTCTGTAAG
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