CX289086

Overview
NameCX289086
Unique NameCX289086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.539e-31
Identity = 76/163 (46.63%), Postives = 109/163 (66.87%), Query Frame = 1
Query:    1 RILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFKILSNNGPSSAEQPPSDQQS-KLASSSAGTESN 459
            RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP E+Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE++DF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK  +    ++A QP S ++  +   S+ G E N
Sbjct:  374 RIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVIDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFKPRN----TAAPQPESGKRKLEEVLSTEGAEEN 532          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.650e-31
Identity = 70/133 (52.63%), Postives = 90/133 (67.67%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLA--PSAGGEGCDNMTMILVQFKILSNNGPSS 393
            RI  AGGF+  GRVNG+L L+RAIGD EFK N +L  EKQIVTA PD+   E+ DDDEF+V+ACDGIWDC +SQ++++FVR  +   T L  I E + D C+A      G GCDNMT+ +V   +L  N  S+
Sbjct:  167 RICAAGGFVDFGRVNGNLALSRAIGDFEFK-NSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVRRGIVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCIV--ALLQENDKSA 296          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.808e-30
Identity = 68/131 (51.91%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    1 RILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFK 366
            RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP ++Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE+VDF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK
Sbjct:  373 RIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPQEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 503          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C1_CAEEL (Probable protein phosphatase 2C F42G9.1 OS=Caenorhabditis elegans GN=F42G9.1 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.628e-28
Identity = 61/123 (49.59%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE--GCDNMTMILVQF 363
            RI  AGG I+ GRVNG LNL+RA GD  +K N+ L  ++Q++TA PD+    L  +DEF+V+ACDGIW+ + SQ++VDFVRD L   +  + +C+ + D CLA S  G+  GCDNMT+I   F
Sbjct:  364 RIHAAGGQIEDGRVNGGLNLSRAFGDHAYKKNQELGLKEQMITALPDVKIEALTPEDEFIVVACDGIWNSMESQQVVDFVRDLLAKGSSCAEVCDALCDACLADSTDGDGTGCDNMTVICTTF 486          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C2_YEAST (Protein phosphatase 2C homolog 2 OS=Saccharomyces cerevisiae GN=PTC2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.195e-26
Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE--GCDNMTMILV 357
            RI+ A GF+++ RVNG+L L+RAIGD EFK N  L  E+QIVT  PDI    L  D DEF+++ACDGIWDCL+SQ+ VD V   L     L+ I  ++ D C AP+  G   GCDNM++++V
Sbjct:  169 RIVAADGFVEMDRVNGNLALSRAIGDFEFKSNPKLGPEEQIVTCVPDILEHSLDYDRDEFVILACDGIWDCLTSQDCVDLVHLGLREGKTLNEISSRIIDVCCAPTTEGTGIGCDNMSIVVV 290          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.479e-26
Identity = 55/123 (44.72%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAG-GEGCDNMTMILVQFK 366
            RI +AGGF+  GRVNG+L+L+RA+GD+E+K +     E+QI+TA PD+   +L   D+FL++ CDG+++    Q++++F+  +L N   L    EK+ D+ LA     G GCDNMT IL+QFK
Sbjct:  173 RIERAGGFVSDGRVNGNLSLSRALGDLEYKKDNRFKPEEQIITALPDVKVTQLSAADKFLLMGCDGVFETWDHQQILNFINSELKNTQNLQKAAEKLLDQLLAKDTSLGTGCDNMTCILIQFK 295          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C3_YEAST (Protein phosphatase 2C homolog 3 OS=Saccharomyces cerevisiae GN=PTC3 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.350e-24
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLT-NETKLSVICEKVFDRCLAPSAGGE--GCDNMTMILV 357
            RI+ A GF+++ RVNG+L L+RAIGD EFK N  L   +Q+VT  PDI    L  D+DEF+++ACDGIWDCL+SQE VD V   ++     LS I  ++ D C +P+  G   GCDNM++ +V
Sbjct:  169 RIVAADGFVEMDRVNGNLALSRAIGDFEFKSNTKLGPHEQVVTCVPDIICHNLNYDEDEFVILACDGIWDCLTSQECVDLVHYGISQGNMTLSDISSRIVDVCCSPTTEGSGIGCDNMSISIV 291          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 3.007e-24
Identity = 63/154 (40.91%), Postives = 92/154 (59.74%), Query Frame = 1
Query:    1 RILKAGGFIQVGR----VNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSSAEQPPSDQQSKLASSSAGT 450
            RI+ AGG +   R    VN  + ++RAIGD+ +K NK L  E+Q++T +P+I   +L DD EFLVIACDG+WD L++Q +VDFVR  L N  +LSVICE +    +  +      DNM++ILV+F             P  ++ ++ A+SS  T
Sbjct:  199 RIVAAGGSVSFSRGSHRVNNGIAVSRAIGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAI--TRDPPSTDNMSVILVRFL-----------HPEGNRGARAATSSTST 339          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.927e-24
Identity = 53/123 (43.09%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAG-GEGCDNMTMILVQFK 366
            RI +AGGF+  GR NG+L+L+RA+GD+E+K +     E+QI++A PD+   +L   D+FL++ CDG+++    Q++++FV  +L +   L    EK+ D+ LA     G GCDNMT ILV FK
Sbjct:  173 RIERAGGFVSDGRANGNLSLSRALGDLEYKKDSRFKPEEQIISALPDVKVTQLTASDKFLLMGCDGVFETWDHQQILNFVNQELKSSQNLQKATEKLLDQLLAKDTSLGTGCDNMTCILVLFK 295          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C4_PARTE (Probable protein phosphatase 2C 4 OS=Paramecium tetraurelia GN=GSPATT00020181001 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.927e-24
Identity = 53/127 (41.73%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNE----TKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 366
            RI +AGGF+  GRVNG+LNL+RA+GD+E+K +  L + +Q++ A PDI  +EL   D+FL++ CDG+++ L  Q+L+ F+  +L N+      L  + E + D  +AP ++ G GCDNMT +++  K
Sbjct:  173 RIERAGGFVSDGRVNGNLNLSRALGDLEYKRDSKLRSNEQLIIALPDIKKVELNQTDKFLLMGCDGVFETLDHQDLLKFINQKLGNQQITPQLLGRVAEDLLDNLIAPDTSAGTGCDNMTTLIIYLK 299          
The following BLAST results are available for this feature:
BLAST of CX289086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PPM1G_BOVIN2.539e-3146.63Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]
PP2C3_SCHPO9.650e-3152.63Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
PPM1G_MOUSE2.808e-3051.91Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]
PP2C1_CAEEL2.628e-2849.59Probable protein phosphatase 2C F42G9.1 OS=Caenorh... [more]
PP2C2_YEAST4.195e-2650.82Protein phosphatase 2C homolog 2 OS=Saccharomyces ... [more]
PP2C6_PARTE5.479e-2644.72Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
PP2C3_YEAST1.350e-2448.78Protein phosphatase 2C homolog 3 OS=Saccharomyces ... [more]
P2C42_ORYSJ3.007e-2440.91Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
PP2C5_PARTE3.927e-2443.09Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
PP2C4_PARTE3.927e-2441.73Probable protein phosphatase 2C 4 OS=Paramecium te... [more]

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Properties
Property NameValue
Genbank descriptionC02008H11SK IF1 Citrus clementina cDNA clone C02008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289086 ID=CX289086; Name=CX289086; organism=Citrus clementina; type=EST; length=614bp
AGAATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAG
TTTAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAA
GTTTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACT
ATTGAACTTTGTGATGACGATGAGTTTCTTGTCATAGCTTGTGATGGGAT
TTGGGATTGCCTTTCAAGTCAAGAACTTGTCGATTTTGTCAGGGATCAAT
TAACCAACGAAACAAAACTATCAGTCATTTGCGAGAAAGTATTCGATCGG
TGCTTGGCTCCATCAGCTGGTGGTGAAGGATGCGACAACATGACCATGAT
CTTGGTTCAGTTTAAAATTCTTTCTAATAATGGTCCTTCTTCGGCTGAGC
AGCCACCATCTGACCAACAATCCAAGTTAGCCAGCAGTTCAGCAGGGACT
GAATCGAATTAGCTGTAGCACTCTTTGCACTGACTAAATGGTACTCATTT
TCTACTGTCTGAAACACTGCTGAGCTCAGAACCATGGTCCCTGATTTTAC
ATTCGGAAAACGATTCTCATGATTTGGTTGTAAATATTTAAGCTTTTTCA
TTTTAATGGGATAG
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