CX289086

Overview
NameCX289086
Unique NameCX289086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C3_PARTE (Probable protein phosphatase 2C 3 OS=Paramecium tetraurelia GN=GSPATT00031056001 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.129e-24
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTN----ETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 366
            RI +AGGF+  GRVNG+LNL+RA+GD+E+K +  L   +Q++ A PD+   EL   D+F+++ CDG+++ L+ QEL+  V   L N    E  LS   E + D+ LAP ++ G GCDNMT ILV  K
Sbjct:  173 RIERAGGFVSDGRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQELLKHVNTTLGNSPVTENLLSKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLK 299          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C2_PARTE (Probable protein phosphatase 2C 2 OS=Paramecium tetraurelia GN=GSPATT00030171001 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.650e-22
Identity = 55/127 (43.31%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL----TNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 366
            RI +AGGF+  GRVNG+LNL+RA+GD+E+K +  L   +Q++ A PD+  +EL   D+FL++ CDG+++ L+  +L+  V   L      E  L    E + D+ LAP ++ G GCDNMT ILV  K
Sbjct:  173 RIERAGGFVSDGRVNGNLNLSRALGDLEYKRDSKLRVNEQLIIAIPDVKKVELGPQDKFLLLGCDGVFETLNHMDLLKQVNSTLGQAQVTEELLRKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLK 299          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C1_PARTE (Protein phosphatase 2C 1 OS=Paramecium tetraurelia GN=GSPATT00029903001 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.650e-22
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL----TNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 366
            RI +AGGF+  GRVNG+LNL+RA+GD+E+K +  L + +Q++ A PD+   EL   D+F+++ CDG+++ L+ QEL+  V   +      E  L    E + D+ LAP ++ G GCDNMT ILV  +
Sbjct:  173 RIERAGGFVSDGRVNGNLNLSRALGDLEYKRDNKLRSNEQLIIALPDVKKTELTPQDKFILMGCDGVFETLNHQELLKQVNSTIGQAQVTEELLKKAAEDLLDQLLAPDTSQGTGCDNMTTILVYLR 299          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1B_MOUSE (Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.931e-21
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSSAEQ 402
            RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  I   ++DEF+V+ACDGIWD +S++EL +FV+ +L     L  +C  V D CL   +     DNM+++LV F    +N P  +E+
Sbjct:  179 RIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGSR----DNMSVVLVCF----SNAPKVSEE 304          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.053e-21
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSSAEQ 402
            RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE  + DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F       P + ++
Sbjct:  174 RIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICFPNAPKVSPEAVKK 304          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.053e-21
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSSAEQ 402
            RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE  + DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F       P + ++
Sbjct:  174 RIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICFPNAPKVSPEAVKK 304          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.053e-21
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSSAEQ 402
            RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE  + DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F       P + ++
Sbjct:  174 RIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICFPNAPKVSPEAVKK 304          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.182e-20
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 363
            RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE  + DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F
Sbjct:  174 RIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICF 291          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.182e-20
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 363
            RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  IE  + DD+F+++ACDGIWD + ++EL DFVR +L     L  +C +V D CL   +     DNM++IL+ F
Sbjct:  174 RIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSR----DNMSVILICF 291          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1B_BOVIN (Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.017e-20
Identity = 50/134 (37.31%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSSAEQ 402
            RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  I   ++DEF+++ACDGIWD +S++EL +FV+ +L     L  +C  V D CL   +     DNM+++LV F    +N P  +++
Sbjct:  179 RIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEFVKSRLEVSDDLENVCNWVVDTCLHKGSR----DNMSIVLVCF----SNAPKVSDE 304          
The following BLAST results are available for this feature:
BLAST of CX289086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
PP2C3_PARTE5.129e-2445.67Probable protein phosphatase 2C 3 OS=Paramecium te... [more]
PP2C2_PARTE1.650e-2243.31Probable protein phosphatase 2C 2 OS=Paramecium te... [more]
PP2C1_PARTE1.650e-2242.52Protein phosphatase 2C 1 OS=Paramecium tetraurelia... [more]
PPM1B_MOUSE6.931e-2138.81Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE... [more]
PPM1A_RABIT9.053e-2137.78Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]
PPM1A_HUMAN9.053e-2137.78Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]
PPM1A_BOVIN9.053e-2137.78Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]
PPM1A_RAT1.182e-2040.98Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_MOUSE1.182e-2040.98Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]
PPM1B_BOVIN2.017e-2037.31Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC02008H11SK IF1 Citrus clementina cDNA clone C02008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289086 ID=CX289086; Name=CX289086; organism=Citrus clementina; type=EST; length=614bp
AGAATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAG
TTTAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAA
GTTTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACT
ATTGAACTTTGTGATGACGATGAGTTTCTTGTCATAGCTTGTGATGGGAT
TTGGGATTGCCTTTCAAGTCAAGAACTTGTCGATTTTGTCAGGGATCAAT
TAACCAACGAAACAAAACTATCAGTCATTTGCGAGAAAGTATTCGATCGG
TGCTTGGCTCCATCAGCTGGTGGTGAAGGATGCGACAACATGACCATGAT
CTTGGTTCAGTTTAAAATTCTTTCTAATAATGGTCCTTCTTCGGCTGAGC
AGCCACCATCTGACCAACAATCCAAGTTAGCCAGCAGTTCAGCAGGGACT
GAATCGAATTAGCTGTAGCACTCTTTGCACTGACTAAATGGTACTCATTT
TCTACTGTCTGAAACACTGCTGAGCTCAGAACCATGGTCCCTGATTTTAC
ATTCGGAAAACGATTCTCATGATTTGGTTGTAAATATTTAAGCTTTTTCA
TTTTAATGGGATAG
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