CX289086

Overview
NameCX289086
Unique NameCX289086
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C21_ORYSJ (Probable protein phosphatase 2C 21 OS=Oryza sativa subsp. japonica GN=Os02g0606900 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.634e-20
Identity = 54/123 (43.90%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL-TNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 366
            RI +AGG + + R+ G L  +RAIGD  +K N+++P  +Q+VT  PDI    + DD EFLVIA DG+WD + +  +V FVR +L   E  L   CEK+   CL  +      DN T ILV+FK
Sbjct:  190 RIQRAGGHVFLQRILGMLATSRAIGDFAYKQNRNMPPSQQMVTCVPDIRVENITDDTEFLVIASDGVWDGMRNNNVVQFVRQELRPGEENLRETCEKLVGHCLHSN------DNATAILVKFK 306          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 49/134 (36.57%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSSAEQ 402
            RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  I   ++DEF+++ACDGIWD +S++EL ++V+ +L     L  +C  V D CL   +     DNM+++LV F    +N P  +++
Sbjct:  179 RIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSR----DNMSIVLVCF----SNAPKVSDE 304          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPM1B_RAT (Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.868e-20
Identity = 49/121 (40.50%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 363
            RI  AGG + + RVNGSL ++RA+GD ++K        +Q+V+  P++  I   ++DEF+V+ACDGIWD +S++EL +FV  +L     L  +C  V D CL   +     DNM+++LV F
Sbjct:  179 RIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFVVLACDGIWDVMSNEELCEFVNSRLEVSDDLENVCNWVVDTCLHKGSR----DNMSIVLVCF 295          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C16_ORYSJ (Probable protein phosphatase 2C 16 OS=Oryza sativa subsp. japonica GN=Os02g0598400 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.888e-18
Identity = 49/113 (43.36%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   31 VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNE-TKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 366
            +G   G + ++R+IGD  FK NK L  EKQ++  +PDI   ++ DD EFLVIA  G+W C+ S ++V ++ D+L+ E  +L VICE+V +  LA        +N T+ILVQFK
Sbjct:  222 LGDFGGGVTISRSIGDFAFKKNKDLDREKQMLVCDPDILADDITDDMEFLVIASQGLWSCVDSADVVSYIHDRLSVEGAELRVICEEVVEFGLASG------ENTTVILVQFK 328          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.368e-18
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 363
            RI  AGG ++  RV GSL ++RA+GD  +K     P E Q+V+A P+++ +   D+DEF+++A DG+WD LS  +L   V  +L     L ++C ++ D CL   +     DNMT ++V F
Sbjct:  203 RIHDAGGTVRRRRVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWDALSGADLAGLVTSRLRLGLDLELLCAQLLDTCLCKGS----LDNMTCMVVCF 319          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C20_ORYSJ (Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica GN=Os02g0600000 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.767e-16
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   46 GSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 366
            G ++++R+IGD   K N+ LP E Q++T NPDI T+++ DD EFLVIA +G+W  +++Q +VD   D+L    +  VICE++    L PS      DN T+ILV FK
Sbjct:  274 GRVSISRSIGDFACKKNERLPPEDQMLTCNPDILTMDITDDMEFLVIATEGLWCNMTNQNVVDHTHDRLLEGAEARVICEELVQFGL-PSG-----DNTTVILVLFK 374          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C18_ORYSJ (Probable protein phosphatase 2C 18 OS=Oryza sativa subsp. japonica GN=Os02g0599200 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.767e-16
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 1
Query:   31 VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKILSNNGPSSAEQPPS--DQQSKLASSSAG 447
            +G    S+ ++R+IGD  FK NK L  E+Q++  +PDI T ++  D EFLVIA  G+W C+ S ++V ++  +L    +L VICE++    LA        +N T+ILVQFK  +         P +     S +AS+SAG
Sbjct:  330 LGYFGESVTISRSIGDFAFKQNKDLNREEQMLICDPDIHTHDITGDMEFLVIASQGLWSCMESADVVAYIHVRLLEGVELRVICEELVQSGLASG------ENTTVILVQFKPGAFQFQYELVDPAAFDTAASNVASTSAG 464          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PPMBL_HUMAN (Probable protein phosphatase 1B-like OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.140e-16
Identity = 46/121 (38.02%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 363
            RI  AGG I+  RV GSL ++RA+GD  +K     P E Q+V+A P+++ +    +DEF+++A DG+WD +S   L   V  +L       ++C ++ D CL   +     DNMT ILV F
Sbjct:  210 RIHAAGGTIRRRRVEGSLAVSRALGDFTYKEAPGRPPELQLVSAEPEVAALARQAEDEFMLLASDGVWDTVSGAALAGLVASRLRLGLAPELLCAQLLDTCLCKGS----LDNMTCILVCF 326          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: P2C17_ORYSJ (Probable protein phosphatase 2C 17 OS=Oryza sativa subsp. japonica GN=Os02g0599150 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   73 GDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNE-TKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 366
            GD  FK NK L  EKQ++  +PDI   ++ DD EFLVIA  G+W C+ S ++V ++ D+L+ E  +L VICE+V +  LA        +N T+ILVQFK
Sbjct:  252 GDFAFKKNKDLDREKQMLVCDPDILADDITDDMEFLVIASQGLWSCVDSADVVSYIHDRLSVEGAELRVICEEVVEFGLASG------ENTTVILVQFK 344          
BLAST of CX289086 vs. ExPASy Swiss-Prot
Match: PP2C4_YEAST (Protein phosphatase 2C homolog 4 OS=Saccharomyces cerevisiae GN=PTC4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 52/140 (37.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query:    1 RILKAGGFIQVGRVNGSLNLARAIGDVEFK------------------LNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP--SAGGEGCDNMTMILV 357
            RI   GG + +GRV G L L+RA  D +FK                  L    P ++  VT  PD+   ++    DEFLV+ACDGIWD  ++++L+ F++  L + TKL  I  K+ D  +A   S  G G DNMT I+V
Sbjct:  227 RINDNGGTVSLGRVGGVLALSRAFSDFQFKRGVTYPHRRTKLTNITQNLTYGTPPQEAQVTVEPDVLMHKIDYSKDEFLVLACDGIWDIYNNKQLIHFIKYHLVSGTKLDTIITKLLDHGIAQANSNTGVGFDNMTAIIV 366          
The following BLAST results are available for this feature:
BLAST of CX289086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
P2C21_ORYSJ2.634e-2043.90Probable protein phosphatase 2C 21 OS=Oryza sativa... [more]
PPM1B_HUMAN4.493e-2036.57Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
PPM1B_RAT5.868e-2040.50Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm... [more]
P2C16_ORYSJ1.888e-1843.36Probable protein phosphatase 2C 16 OS=Oryza sativa... [more]
PPMBL_MOUSE9.368e-1838.02Probable protein phosphatase 1B-like OS=Mus muscul... [more]
P2C20_ORYSJ1.767e-1643.93Probable protein phosphatase 2C 20 OS=Oryza sativa... [more]
P2C18_ORYSJ1.767e-1636.88Probable protein phosphatase 2C 18 OS=Oryza sativa... [more]
PPMBL_HUMAN5.140e-1638.02Probable protein phosphatase 1B-like OS=Homo sapie... [more]
P2C17_ORYSJ1.145e-1545.45Probable protein phosphatase 2C 17 OS=Oryza sativa... [more]
PP2C4_YEAST1.496e-1537.14Protein phosphatase 2C homolog 4 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC02008H11SK IF1 Citrus clementina cDNA clone C02008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289086 ID=CX289086; Name=CX289086; organism=Citrus clementina; type=EST; length=614bp
AGAATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAG
TTTAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAA
GTTTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACT
ATTGAACTTTGTGATGACGATGAGTTTCTTGTCATAGCTTGTGATGGGAT
TTGGGATTGCCTTTCAAGTCAAGAACTTGTCGATTTTGTCAGGGATCAAT
TAACCAACGAAACAAAACTATCAGTCATTTGCGAGAAAGTATTCGATCGG
TGCTTGGCTCCATCAGCTGGTGGTGAAGGATGCGACAACATGACCATGAT
CTTGGTTCAGTTTAAAATTCTTTCTAATAATGGTCCTTCTTCGGCTGAGC
AGCCACCATCTGACCAACAATCCAAGTTAGCCAGCAGTTCAGCAGGGACT
GAATCGAATTAGCTGTAGCACTCTTTGCACTGACTAAATGGTACTCATTT
TCTACTGTCTGAAACACTGCTGAGCTCAGAACCATGGTCCCTGATTTTAC
ATTCGGAAAACGATTCTCATGATTTGGTTGTAAATATTTAAGCTTTTTCA
TTTTAATGGGATAG
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