CX289090

Overview
NameCX289090
Unique NameCX289090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.633e-29
Identity = 54/93 (58.06%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.633e-29
Identity = 54/93 (58.06%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.132e-29
Identity = 52/94 (55.32%), Postives = 78/94 (82.98%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTL 423
            +Y+VVGR LP+EK+    +Y+M+++A + + AKS+FWYFLR+LKK KK+ G++++I +++E +P KIKN+GIWLRY SR+G HNMY+EYRD T+
Sbjct:    9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTV 102          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.785e-29
Identity = 56/93 (60.22%), Postives = 75/93 (80.65%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            +YQVVGR +PTE +  PK++RM+L+A NE  AKS++WYFL+ + KVKK+ G+++AINEI E  P K K +GIW+RY SR+G HNMYKE+RDTT
Sbjct:    5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTT 97          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.079e-28
Identity = 52/93 (55.91%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            +Y+VVGR LP+ K+  P +YRM+++A N V AKS+FWYF+ +L+K+KK++G+++    +FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T
Sbjct:    9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLT 101          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_ICTPU (60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.996e-27
Identity = 51/93 (54.84%), Postives = 74/93 (79.57%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            +Y+VVGR LP+ K+  P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ +    + E++P K+KN+GIWLRY SR+G HNMY+EYRD T
Sbjct:    9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLT 101          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.690e-26
Identity = 50/93 (53.76%), Postives = 72/93 (77.42%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            +Y+VVGR LP+ K+  P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ +    + EK P K+KN+G+WLR  SR+G HNMY+EYRD T
Sbjct:    9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLT 101          
The following BLAST results are available for this feature:
BLAST of CX289090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_HUMAN1.633e-2958.0660S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN1.633e-2958.0660S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_DROME2.132e-2955.3260S ribosomal protein L18a OS=Drosophila melanogas... [more]
RL20_SCHPO2.785e-2960.2260S ribosomal protein L20 OS=Schizosaccharomyces p... [more]
RL18A_DANRE3.079e-2855.9160S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
RL18A_ICTPU1.996e-2754.8460S ribosomal protein L18a OS=Ictalurus punctatus ... [more]
RL18A_SALSA1.690e-2653.7660S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]

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Properties
Property NameValue
Genbank descriptionC02009A06SK IF1 Citrus clementina cDNA clone C02009A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289090 ID=CX289090; Name=CX289090; organism=Citrus clementina; type=EST; length=425bp
CAGGAATTCGGCACGAGGTGGTCCTAGGGTTTTGGCACCAAACCCTCAAT
GCAAAGCGCCGCATATAAACCCCGGTTCCCCTCCTTCACCTGCAGTGAGC
CAGCTCTCCTTGGAGGAAAAATGGTTACCTTCAGGTTTCACCAGTACCAG
GTTGTGGGAAGAGCTTTGCCCACAGAAAAGGATGAGCATCCCAAGATTTA
CAGAATGAAGCTCTGGGCCACCAACGAGGTTCGTGCCAAATCCAAGTTCT
GGTATTTCTTGAGGAAGCTGAAGAAAGTTAAGAAGAGTAATGGGCAGATG
TTAGCAATCAATGAGATTTTTGAGAAGAATCCTACCAAAATTAAGAACTA
TGGAATCTGGTTGCGATATCAAAGCCGAACTGGGTATCACAATATGTACA
AGGAATATCGAGACACTACTCTTAA
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