CX289095

Overview
NameCX289095
Unique NameCX289095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289095 vs. ExPASy Swiss-Prot
Match: XYLL1_ARATH (D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 33/80 (41.25%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   99 DLFQRRYLRSVTIGVGLMVFQQFGGINGICFYTSTIFESAGFSSSVG----TIIYAILQVVVTGLNTIVIDRAGRKPLLL 326
            +LF+ + L+++TI  GL++FQQ  G   + +Y  +I ++AGFS++      +I+  +L++V+TG++ IVIDR GR+PLLL
Sbjct:  296 ELFRGKCLKALTIAGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLL 375          
BLAST of CX289095 vs. ExPASy Swiss-Prot
Match: GTR8_RAT (Solute carrier family 2, facilitated glucose transporter member 8 OS=Rattus norvegicus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  123 RSVTIGVGLMVFQQFGGINGICFYTSTIFESAGF-SSSVGTIIYAILQVVVTGLNTIVIDRAGRKPLLLVS 332
            + + IG+ LMVFQQ  G+N I FY +TIFE A F  SS+ ++   I+QV+ T +  +++DRAGRK LL +S
Sbjct:  256 KPLIIGICLMVFQQLSGVNAIMFYANTIFEEAKFKDSSLASVTVGIIQVLFTAVAALIMDRAGRKLLLALS 326          
BLAST of CX289095 vs. ExPASy Swiss-Prot
Match: GTR8_HUMAN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  135 IGVGLMVFQQFGGINGICFYTSTIFESAGF-SSSVGTIIYAILQVVVTGLNTIVIDRAGRKPLLLVS 332
            IGV LM FQQ  G+N + FY  TIFE A F  SS+ +++  ++QV+ T +  +++DRAGR+ LL++S
Sbjct:  259 IGVSLMAFQQLSGVNAVMFYAETIFEEAKFKDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLS 325          
BLAST of CX289095 vs. ExPASy Swiss-Prot
Match: GTR1_HUMAN (Solute carrier family 2, facilitated glucose transporter member 1 OS=Homo sapiens GN=SLC2A1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 3
Query:    3 KLRGKDADITHEAAEIQDYIETLERLPKAGMLDLFQR-RYLRSVTIGVGLMVFQQFGGINGICFYTSTIFESAGFSSSV-GTIIYAILQVVVTGLNTIVIDRAGRKPLLLV 329
            KLRG  AD+TH+  E+++    + R  K  +L+LF+   Y + + I V L + QQ  GIN + +Y+++IFE AG    V  TI   I+    T ++  V++RAGR+ L L+
Sbjct:  230 KLRGT-ADVTHDLQEMKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLI 339          
BLAST of CX289095 vs. ExPASy Swiss-Prot
Match: GTR8_MOUSE (Solute carrier family 2, facilitated glucose transporter member 8 OS=Mus musculus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  123 RSVTIGVGLMVFQQFGGINGICFYTSTIFESAGF-SSSVGTIIYAILQVVVTGLNTIVIDRAGRKPLLLVS 332
            + + IG+ LMVFQQ  G+N I FY ++IFE A F  SS+ ++   I+QV+ T +  +++DRAGR+ LL +S
Sbjct:  256 KPLIIGISLMVFQQLSGVNAIMFYANSIFEEAKFKDSSLASVTVGIIQVLFTAVAALIMDRAGRRLLLALS 326          
BLAST of CX289095 vs. ExPASy Swiss-Prot
Match: XYLL2_ARATH (D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.528e-11
Identity = 32/80 (40.00%), Postives = 56/80 (70.00%), Query Frame = 3
Query:   99 DLFQRRYLRSVTIGVGLMVFQQFGGINGICFYTSTIFESAGFSSSVG----TIIYAILQVVVTGLNTIVIDRAGRKPLLL 326
            +LFQ + L+++ IG GL++FQQ  G   + +Y  +I ++AGFS++      +I+  +L++++TG+  +VIDR GR+PLLL
Sbjct:  296 ELFQGKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLL 375          
BLAST of CX289095 vs. ExPASy Swiss-Prot
Match: GTR8_BOVIN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Bos taurus GN=SLC2A8 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  135 IGVGLMVFQQFGGINGICFYTSTIFESAGF-SSSVGTIIYAILQVVVTGLNTIVIDRAGRKPLLLVS 332
            IG+ LM FQQ  G+N + FY  TIFE A F  SS+ +++  ++QV+ T    +++DRAGR+ LL +S
Sbjct:  260 IGISLMAFQQLSGVNAVMFYAETIFEEAKFKDSSLASVVVGVIQVLFTATAALIMDRAGRRLLLTLS 326          
BLAST of CX289095 vs. ExPASy Swiss-Prot
Match: GTR2_BOVIN (Solute carrier family 2, facilitated glucose transporter member 2 OS=Bos taurus GN=SLC2A2 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 3
Query:    3 KLRGKDADITHEAAEIQDYIETLERLPKAGMLDLFQRR-YLRSVTIGVGLMVFQQFGGINGICFYTSTIFESAGFSSSV-GTIIYAILQVVVTGLNTIVIDRAGRKPLLLV 329
            +LRG D DIT +  E++   E      K  ++ LF    Y + + + + L   QQF GINGI +Y+++IF++AG S  V  TI    +  V T ++  ++++AGR+ L L+
Sbjct:  260 RLRGSD-DITKDITEMRKEREEASNEKKVSIIQLFTNASYRQPILVALMLHAAQQFSGINGIFYYSTSIFQTAGISQPVYATIGVGAVNTVFTAVSVFLVEKAGRRSLFLI 369          
The following BLAST results are available for this feature:
BLAST of CX289095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
XYLL1_ARATH1.981e-1141.25D-xylose-proton symporter-like 1 OS=Arabidopsis th... [more]
GTR8_RAT1.981e-1147.89Solute carrier family 2, facilitated glucose trans... [more]
GTR8_HUMAN2.587e-1146.27Solute carrier family 2, facilitated glucose trans... [more]
GTR1_HUMAN2.587e-1136.94Solute carrier family 2, facilitated glucose trans... [more]
GTR8_MOUSE5.764e-1145.07Solute carrier family 2, facilitated glucose trans... [more]
XYLL2_ARATH7.528e-1140.00D-xylose-proton symporter-like 2 OS=Arabidopsis th... [more]
GTR8_BOVIN9.832e-1144.78Solute carrier family 2, facilitated glucose trans... [more]
GTR2_BOVIN9.832e-1134.23Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionC02009A11SK IF1 Citrus clementina cDNA clone C02009A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289095 ID=CX289095; Name=CX289095; organism=Citrus clementina; type=EST; length=411bp
AGAAACTTCGTGGCAAGGATGCTGATATAACACATGAGGCAGCTGAAATC
CAGGATTACATAGAAACTCTAGAAAGGCTTCCAAAAGCTGGAATGCTGGA
TTTGTTTCAAAGAAGATACTTGCGCTCAGTCACGATTGGAGTCGGATTGA
TGGTGTTTCAACAATTTGGTGGAATCAATGGAATCTGTTTTTACACCAGC
ACTATTTTTGAGTCAGCAGGATTTTCTTCCAGCGTTGGAACAATAATCTA
TGCCATACTTCAGGTTGTTGTTACAGGCCTGAATACAATTGTGATCGACA
GAGCTGGAAGAAAGCCCTTATTATTGGTTTCTGCAACAGGACTAGTCTTG
GGTTGTTTACTCGTAGGGGTTTCATTCTTTCTGAAGGATCATGAATTGGG
ACTCGAGTCAG
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