CX289104

Overview
NameCX289104
Unique NameCX289104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLC (Triosephosphate isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL6 (Triosephosphate isomerase OS=Escherichia coli O6 GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL5 (Triosephosphate isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECOK1 (Triosephosphate isomerase OS=Escherichia coli O1:K1 / APEC GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECOHS (Triosephosphate isomerase OS=Escherichia coli O9:H4 (strain HS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECODH (Triosephosphate isomerase OS=Escherichia coli (strain K12 / DH10B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECO8A (Triosephosphate isomerase OS=Escherichia coli O8 (strain IAI1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECO7I (Triosephosphate isomerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECO5E (Triosephosphate isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
[Close]
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ECO57 (Triosephosphate isomerase OS=Escherichia coli O157:H7 GN=tpiA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.789e-20
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 2 
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            +  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK +   +I
Sbjct:  160 EGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVI 245
The following BLAST results are available for this feature:
BLAST of CX289104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ECOLC1.789e-2058.62Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOL61.789e-2058.62Triosephosphate isomerase OS=Escherichia coli O6 G... [more]
TPIS_ECOL51.789e-2058.62Triosephosphate isomerase OS=Escherichia coli O6:K... [more]
TPIS_ECOK11.789e-2058.62Triosephosphate isomerase OS=Escherichia coli O1:K... [more]
TPIS_ECOHS1.789e-2058.62Triosephosphate isomerase OS=Escherichia coli O9:H... [more]
TPIS_ECODH1.789e-2058.62Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECO8A1.789e-2058.62Triosephosphate isomerase OS=Escherichia coli O8 (... [more]
TPIS_ECO7I1.789e-2058.62Triosephosphate isomerase OS=Escherichia coli O7:K... [more]
TPIS_ECO5E1.789e-2058.62Triosephosphate isomerase OS=Escherichia coli O157... [more]
TPIS_ECO571.789e-2058.62Triosephosphate isomerase OS=Escherichia coli O157... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009B09SK IF1 Citrus clementina cDNA clone C02009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289104 ID=CX289104; Name=CX289104; organism=Citrus clementina; type=EST; length=269bp
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGGCTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCAT
CTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAAC
CTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTC
ATCGATATTATCAAGTCTG
back to top