CX289104

Overview
NameCX289104
Unique NameCX289104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 139.043 bits (349), Expect = 7.001e-33
Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            + VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK +V   VA STRIIYGGSV GA CKELA+QPDVDGF V GASLKPEF+DII +
Sbjct:  159 NKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPEFVDIINA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.001e-33
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            VVLAYEPVWAIGTGK A+P QAQEVH +LR+WLK NVS  VA S RIIYGGSV G  CKELA+Q D+DGFLVGGASLKPEFIDII +
Sbjct:  160 VVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPEFIDIINA 246          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.560e-32
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEP+WAIGTG VAT  QAQEVHA +R WLK NVS +VA  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:  159 NVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.538e-32
Identity = 63/87 (72.41%), Postives = 75/87 (86.21%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            VV+AYEPVWAIGTGKVAT  QAQEVH+ +RKWLKD +SAE A +TRIIYGGSV+  NCK+LA + D+DGFLVGGASLKP F+DI+ +
Sbjct:  161 VVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLKPAFVDIVNA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.927e-32
Identity = 70/90 (77.78%), Postives = 74/90 (82.22%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 268
            DNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N   LAAQ DVDGFLVGGASLK PEF  II S
Sbjct:  160 DNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINS 249          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 7.741e-32
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            + VV+AYEP+WAIGTGKVAT  QAQEVHA +RKWL + +S E A + R+IYGGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:  159 NKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.724e-31
Identity = 65/90 (72.22%), Postives = 76/90 (84.44%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 268
            +N+V+AYEPVWAIGTGKVA+P QAQEVH  +R+WLK NVSAEVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ +
Sbjct:  217 ENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNA 306          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.252e-31
Identity = 61/88 (69.32%), Postives = 77/88 (87.50%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            +VV+AYEPVWAIGTGKVATP QA++VH  +R WL +NVS +VAASTRI+YGGSV+ ANC+ LA QP++DGFLVGGAS+KP F++I+ S
Sbjct:  154 DVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMKPTFLEIVDS 241          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.252e-31
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 268
            DN+V+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ S
Sbjct:  218 DNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNS 307          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.942e-31
Identity = 66/89 (74.16%), Postives = 75/89 (84.27%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 268
            NVV+AYEPVWAIGTGKVA+P QAQEVHA +R WLK NVSA+VA++ RIIYGGSVN ANC ELA + D+DGFLVGGASLK P+F  I  S
Sbjct:  202 NVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNS 290          
The following BLAST results are available for this feature:
BLAST of CX289104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PIG7.001e-3376.40Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPISB_DANRE7.001e-3378.16Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_NEUCR1.560e-3272.73Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_EMENI4.538e-3272.41Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_STELP5.927e-3277.78Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_PARBA7.741e-3269.66Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIC_FRAAN1.724e-3172.22Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_GRAVE2.252e-3169.32Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIC_ARATH2.252e-3173.33Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_SECCE2.942e-3174.16Triosephosphate isomerase, chloroplastic OS=Secale... [more]

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Properties
Property NameValue
Genbank descriptionC02009B09SK IF1 Citrus clementina cDNA clone C02009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289104 ID=CX289104; Name=CX289104; organism=Citrus clementina; type=EST; length=269bp
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGGCTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCAT
CTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAAC
CTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTC
ATCGATATTATCAAGTCTG
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