CX289104

Overview
NameCX289104
Unique NameCX289104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_DEIRA (Triosephosphate isomerase OS=Deinococcus radiodurans GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.327e-15
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 241
            +VV+AYEPVWAIGTGK AT   A+E+ A +R  L++   A  A   R++YGGSV   N  E+  +P+V+G LVGGASLK
Sbjct:  155 DVVVAYEPVWAIGTGKTATADDAEELAAAIRGALREQYGAR-AEGIRVLYGGSVKPENIAEICGKPNVNGALVGGASLK 232          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_CLOK5 (Triosephosphate isomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.327e-15
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            + +V+AYEP+WAIGTGK AT  QA +  A +R  +        A   RI YGGSV  A  K    QP +DG LVGGASLKP+
Sbjct:  159 EKIVIAYEPIWAIGTGKTATDKQANDTIAHIRGVVSKMYGENAAEVVRIQYGGSVKPATIKAQMEQPHIDGALVGGASLKPQ 240          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBL (Triosephosphate isomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.327e-15
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            + +V+AYEP+WAIGTGK AT  QA E    +R  +KD     VA   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:  159 EKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGENVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_VIBMA (Triosephosphate isomerase OS=Vibrio marinus GN=tpiA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.732e-15
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 238
            +  ++AYEP+WAIGTGK AT   AQ +HA++R  + +  S  VA +  I YGGSV   N     AQPD+DG LVGGA+L
Sbjct:  162 EGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAAL 239          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_SILPO (Triosephosphate isomerase OS=Silicibacter pomeroyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.732e-15
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 238
            VV+AYEPVWAIGTG V T  Q  EVH  LR+ L     +E A + R++YGGSV   N  E+ A  +VDG LVGGASL
Sbjct:  158 VVVAYEPVWAIGTGLVPTLEQIAEVHDTLRQQLIGRFGSETAEAIRLLYGGSVKPGNAAEIFAVSNVDGALVGGASL 234          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGE (Triosephosphate isomerase OS=Mycoplasma genitalium GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.732e-15
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 241
            N+V+AYEP+WAIGTGK ATP  A +    +R+++ D     VA +  I+YGGSV+  N ++LA    +DGFLVG ASL+
Sbjct:  154 NLVIAYEPLWAIGTGKTATPEVANQTIKTIREYINDLYDENVANNISILYGGSVDHNNIQKLAIMEQIDGFLVGKASLE 232          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBM (Triosephosphate isomerase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.732e-15
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            + +V+AYEP+WAIGTGK AT  QA E    +R  +K     +VA+  RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:  159 EKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKSMYGEDVASKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBB (Triosephosphate isomerase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.732e-15
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            + VV+AYEP+WAIGTGK AT  QA E    +R  + +    EVA   RI YGGSV      E  A  D+DG LVGGASLK E
Sbjct:  159 EKVVIAYEPIWAIGTGKTATKEQANETILAIRNVVVEMYGKEVADKVRIQYGGSVKPNTITEQMAMSDIDGALVGGASLKAE 240          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBA (Triosephosphate isomerase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.732e-15
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            + VV+AYEP+WAIGTGK AT  QA E    +R  + +    EVA   RI YGGSV      E  A  D+DG LVGGASLK E
Sbjct:  159 EKVVIAYEPIWAIGTGKTATKEQANETILAIRNVVVEMYGKEVADKVRIQYGGSVKPNTITEQMAMSDIDGALVGGASLKAE 240          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_VIBVY (Triosephosphate isomerase OS=Vibrio vulnificus (strain YJ016) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.263e-15
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 238
            +  ++AYEP+WAIGTGK AT   AQ +HA +R  +     A VA    I YGGSV   N +   AQPD+DG LVGGASL
Sbjct:  162 NGAIIAYEPIWAIGTGKAATAEDAQRIHASIRAMIAAK-DAAVAEQVIIQYGGSVKPENAEAYFAQPDIDGALVGGASL 239          
The following BLAST results are available for this feature:
BLAST of CX289104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DEIRA1.327e-1553.16Triosephosphate isomerase OS=Deinococcus radiodura... [more]
TPIS_CLOK51.327e-1550.00Triosephosphate isomerase OS=Clostridium kluyveri ... [more]
TPIS_CLOBL1.327e-1551.22Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_VIBMA1.732e-1550.63Triosephosphate isomerase OS=Vibrio marinus GN=tpi... [more]
TPIS_SILPO1.732e-1555.84Triosephosphate isomerase OS=Silicibacter pomeroyi... [more]
TPIS_MYCGE1.732e-1549.37Triosephosphate isomerase OS=Mycoplasma genitalium... [more]
TPIS_CLOBM1.732e-1550.00Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CLOBB1.732e-1552.44Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CLOBA1.732e-1552.44Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_VIBVY2.263e-1551.90Triosephosphate isomerase OS=Vibrio vulnificus (st... [more]

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Properties
Property NameValue
Genbank descriptionC02009B09SK IF1 Citrus clementina cDNA clone C02009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289104 ID=CX289104; Name=CX289104; organism=Citrus clementina; type=EST; length=269bp
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGGCTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCAT
CTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAAC
CTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTC
ATCGATATTATCAAGTCTG
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