CX289104

Overview
NameCX289104
Unique NameCX289104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_XANFL (Triosephosphate isomerase OS=Xanthobacter flavus GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 268
            ++V+AYEP+WAIGTG+  T     EVH  +R  L +   AE A   RI+YGGSV   N   L A  +VDG LVGGASLK  +F+ I ++
Sbjct:  160 SLVIAYEPIWAIGTGRTPTTDDVAEVHGAIRHILAERFGAE-ANGIRILYGGSVKPDNAAALLATANVDGALVGGASLKAADFLAIARA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_PSYCK (Triosephosphate isomerase OS=Psychrobacter cryohalolentis (strain K5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            +++AYEPVWAIGTGKV T A+    H  +++ L     A+  ++  ++YGGSVN  N    AA P +DG LVGGASLK +
Sbjct:  178 LIIAYEPVWAIGTGKVPTVAEVSATHKHIKQILAG--FADSLSNMTVLYGGSVNADNANSFAADPMIDGALVGGASLKAD 255          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 2
Query:   11 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            ++AYEP+WAIGTGK AT A A++V   +++    N        T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  163 IIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 2
Query:   11 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            ++AYEP+WAIGTGK AT A A++V   +++    N        T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  163 IIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 2
Query:   11 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            ++AYEP+WAIGTGK AT A A++V   +++    N        T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:  163 IIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_FINM2 (Triosephosphate isomerase OS=Finegoldia magna (strain ATCC 29328) GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            +V+AYEP+WAIGTGK A+   AQ +   +R  L    S ++A S RI YGGSV   N  ++ ++ D+DG LVGGASL+ E
Sbjct:  162 LVIAYEPIWAIGTGKTASSDDAQSMCKFIRNLLSKMYSKDLADSVRIQYGGSVKPENILDIMSKEDIDGALVGGASLEAE 241          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUSU (Triosephosphate isomerase 1 OS=Brucella suis GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 241
            +N ++AYEPVWAIGTG   T    +  HA +R+ L +   A+  A  R++YGGSV  +N  EL    DVDG LVGGASLK
Sbjct:  162 ENTIIAYEPVWAIGTGLTPTVQDVRAAHAFMREQLIERFGAK-GAHLRLLYGGSVKPSNAAELLGVADVDGALVGGASLK 240          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUAB (Triosephosphate isomerase 1 OS=Brucella abortus GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 241
            +N ++AYEPVWAIGTG   T    +  HA +R+ L +   A+  A  R++YGGSV  +N  EL    DVDG LVGGASLK
Sbjct:  162 ENTIIAYEPVWAIGTGLTPTVQDVRAAHAFMREQLIERFGAK-GAHLRLLYGGSVKPSNAAELLGVADVDGALVGGASLK 240          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_NEIMB (Triosephosphate isomerase OS=Neisseria meningitidis serogroup B GN=tpiA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.267e-14
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 238
            N+ +AYEPVWAIGTGKVAT  Q  ++HA + K +     ++V    R++YGGSV   N  ++ A P VDG LVGGASL
Sbjct:  161 NIAVAYEPVWAIGTGKVATVEQIADMHAFIYKEILSLCGSDV--KIRVLYGGSVKADNAADIFAVPYVDGALVGGASL 236          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_NEIMA (Triosephosphate isomerase OS=Neisseria meningitidis serogroup A GN=tpiA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.267e-14
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 238
            N+ +AYEPVWAIGTGKVAT  Q  ++HA + K +     ++V    R++YGGSV   N  ++ A P VDG LVGGASL
Sbjct:  161 NIAVAYEPVWAIGTGKVATVEQIADMHAFIYKEILSLCGSDV--KIRVLYGGSVKADNAADIFAVPYVDGALVGGASL 236          
The following BLAST results are available for this feature:
BLAST of CX289104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_XANFL2.502e-1448.31Triosephosphate isomerase OS=Xanthobacter flavus G... [more]
TPIS_PSYCK2.502e-1447.50Triosephosphate isomerase OS=Psychrobacter cryohal... [more]
TPIS_MYCHY2.502e-1450.63Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ2.502e-1450.63Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH22.502e-1450.63Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_FINM22.502e-1448.75Triosephosphate isomerase OS=Finegoldia magna (str... [more]
TPIS1_BRUSU2.502e-1450.00Triosephosphate isomerase 1 OS=Brucella suis GN=tp... [more]
TPIS1_BRUAB2.502e-1450.00Triosephosphate isomerase 1 OS=Brucella abortus GN... [more]
TPIS_NEIMB3.267e-1451.28Triosephosphate isomerase OS=Neisseria meningitidi... [more]
TPIS_NEIMA3.267e-1451.28Triosephosphate isomerase OS=Neisseria meningitidi... [more]

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Properties
Property NameValue
Genbank descriptionC02009B09SK IF1 Citrus clementina cDNA clone C02009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289104 ID=CX289104; Name=CX289104; organism=Citrus clementina; type=EST; length=269bp
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGGCTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCAT
CTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAAC
CTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTC
ATCGATATTATCAAGTCTG
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