CX289104

Overview
NameCX289104
Unique NameCX289104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.290e-26
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTG  ATP  AQ++HA +RK+L   +  + A+  RI+YGGS NG+N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  159 NVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.847e-25
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTG  AT   AQ++H E+R +LKD + A+ A   RIIYGGSVNG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  159 NVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPEFVDIINS 245          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.847e-25
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKS 268
            +V+AYEPVWAIGTG VATP +AQ+ H  +RKW+ + VS +VA  T I+YGGSVN  NC  L+ Q D+DGFLVGGASL   +FI IIKS
Sbjct:  164 IVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASLVASDFIAIIKS 251          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.847e-25
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTG  AT   AQ++HA +R +L +  S +VA + RI++GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  159 NVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.114e-25
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTG  AT   AQ++H  +R++L + +S +VA S RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  159 NVVVAYEPVWAIGTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.114e-25
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTG  AT   AQ++H  +R +L + +  + A  TRI+YGGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  159 NVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.667e-24
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 205
            NVV+AYEPVWAIGTGK ATP QAQEVH  LRKW  DNVSA+V+AS RI YGGSV  ANC+ELAA+PD
Sbjct:  140 NVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.941e-24
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 268
            +VV+AYEPVWAIGTGK ATP QAQEVHA +R  +KD    EVA   RI YGGSV  +N KEL   PD+DG L+GGASL  E F++IIKS
Sbjct:  162 SVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKS 250          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.013e-23
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 205
            NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELAA+PD
Sbjct:  140 NVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.257e-23
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTG  AT   AQ +H  +R++L   +S + A   RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  159 NVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
The following BLAST results are available for this feature:
BLAST of CX289104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_YEAST8.290e-2661.36Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_YARLI1.847e-2564.77Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_DICDI1.847e-2562.50Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_ASHGO1.847e-2561.36Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_KLULA4.114e-2561.36Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_CANGA4.114e-2560.23Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_AEDTO2.667e-2477.61Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_CHLT35.941e-2464.04Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_CULPI1.013e-2374.63Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_KLUMA2.257e-2359.09Triosephosphate isomerase OS=Kluyveromyces marxian... [more]

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Properties
Property NameValue
Genbank descriptionC02009B09SK IF1 Citrus clementina cDNA clone C02009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289104 ID=CX289104; Name=CX289104; organism=Citrus clementina; type=EST; length=269bp
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGGCTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCAT
CTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAAC
CTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTC
ATCGATATTATCAAGTCTG
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